Volume 4 Supplement 1

## The ISIBM International Joint Conferences on Bioinformatics, Systems Biology and Intelligent Computing (IJCBS)

# A conceptual cellular interaction model of left ventricular remodelling post-MI: dynamic network with exit-entry competition strategy

- Yunji Wang
^{1}, - Hai-Chao Han
^{2}, - Jack Y Yang
^{3}, - Merry L Lindsey
^{4}and - Yufang Jin
^{1}Email author

**4(Suppl 1)**:S5

**DOI: **10.1186/1752-0509-4-S1-S5

© Jin et al; licensee BioMed Central Ltd. 2010

**Published: **28 May 2010

## Abstract

### Background

Progressive remodelling of the left ventricle (LV) following myocardial infarction (MI) is an outcome of spatial-temporal cellular interactions among different cell types that leads to heart failure for a significant number of patients. Cellular populations demonstrate temporal profiles of flux post-MI. However, little is known about the relationship between cell populations and the interaction strength among cells post-MI. The objective of this study was to establish a conceptual cellular interaction model based on a recently established graph network to describe the interaction between two types of cells.

### Results

We performed stability analysis to investigate the effects of the interaction strengths, the initial status, and the number of links between cells on the cellular population in the dynamic network. Our analysis generated a set of conditions on interaction strength, structure of the network, and initial status of the network to predict the evolutionary profiles of the network. Computer simulations of our conceptual model verified our analysis.

### Conclusions

Our study introduces a dynamic network to model cellular interactions between two different cell types which can be used to model the cellular population changes post-MI. The results on stability analysis can be used as a tool to predict the responses of particular cell populations.

## Background

Progressive remodelling of the left ventricle (LV) following myocardial infarction (MI) involves spatial-temporal cellular interactions among different cell types [1]. Apoptosis of myocytes, infiltration of neutrophils, activation of macrophages, activation of endothelial cells, and proliferation of fibroblasts are LV remodelling components [2–5]. These events are accompanied with a temporal flux in the cellular population profiles post-MI [6–13]. Among these cells, macrophages play a pivotal role by coordinating phagocytosis of cellular debris at the MI site and secreting cytokines interleukin-1β, interleukin-6, and tumor necrosis factor α, matrix metalloproteinases (MMPs), tissue inhibitor of metalloproteinases (TIMPs), and growth factors [14–17]. Macrophages are known to undergo a classical activation characterized by pro-inflammatory gene expression in the early stage post-MI. In the later stage post-MI, macrophages undergo an alternative activation characterized by the secretion of factors that promote fibrosis, would healing, neovascularization and granuloma formation. While research has been carried out to investigate the populations of macrophages through different activation schemes [18], the relationship and interactions between these two activated macrophage cellular populations post-MI remains unclear.

Macrophages are believed to first undergo classical activation, and then proceed through the alternative activation pathway [19, 20]. Macrophages do not die locally in the scar tissue, but emigrate from scar tissue to the lymph node system [21]. Thus, the MI site behaves as a network that regulates the exit and entry of macrophages, and the local cytokine environment determines the populations of classically and alternatively activated macrophages. Accordingly, the purpose of this study was to investigate the mathematical relationship among macrophage populations and interactions in a dynamic network.

The evolution of a dynamic network has been carried out in game theory, social networks, and other biological systems [22–26]. Existing studies have demonstrated that outcomes of tumor growth are determined by the cellular interactions, and these interactions include both cooperation and competition among these cells through a dynamic network [27]. In our research, we have generated stability conditions of a LV network containing two types of macrophages and introduced a new approach to model the temporal activation of macrophages post-MI.

## Results

We developed a dynamic network including two types of macrophages based on a previous graphic model published by Nowak and colleagues [28]. To elucidate the underlying mechanisms of the dynamical evolution, theoretical analysis was carried out and conditions for different evolutionary profiles were obtained. Computer simulations illustrated the dynamic evolution of the network with interactions among two types of macrophages.

### Mathematical model of exit-entry updating law in a dynamic network

where *A* and *C* denote the type of cells in the network (*A* is the alternative activated macrophage and *C* is the classical activated macrophage), parameters *a, b, c, and d* denote the interaction strength between type *A* and *C.* Cells. Specifically, a type *A* cell provides energy *a* to an interacted type *A* cell and provides energy *b* to an interacted type *C* cell. A type *C* cell provides energy *c* to an interacted type *A* cell and *d* to an interacted type *C* cell. In the interaction matrix *I*, different parameter settings of *a, b, c, and d* represent different interaction strengths among cells. Within the network, each cell has an energy function *ε* based on the interactions with all of its linked cells as shown in Figure 1. Fitness function of a cell, *F*, is determined by equation F = 1 – *ω + ωε* (1)

*ω*is a variable between (0, 1), denoting selection strength. The larger the intensity of selection is, the larger the contribution of payoff to the fitness function is. A strong selection is indicated as

*ω*= 1 and a weak selection is indicated as

*ω*<< 1.

In this study, an exit-entry strategy was chosen for the conceptual model, since exit-entry is a fundamental cellular migration scheme for cellular interaction post-MI. In the exit-entry strategy, each iterative step in the exit-entry evolutionary process is called a generation. During the evolutionary process, a cell is chosen randomly to exit in each generation. Assuming a vacated vertex caused by cellular exiting will be only replaced with either a new type *A* or type *C* cell, a probability of replacing by a type *A* cell is determined by *F*_{
A
}/(*F*_{
A
}+*F*_{
C
}), where *F*_{
A
} and *F*_{
C
} are fitness functions of all adjacent cells linked to the vacated vertex. To be specific, the fitness function contributed by all the neighbouring type *A* cells connected to the exiting cell, is calculated as
, where *ω* is the intensity of selection, *K*_{
A
} is the number of type *A* cells linked to the exiting cell.

where *O*(•) denotes higher order terms of a variable.

*P*

_{ A }and

*P*

_{ C }as the ratio of type

*A*and

*C*cellular population over the total population. Variables

*P*

_{ AA },

*P*

_{ AC },

*P*

_{ CA },

*and*

*P*

_{ CC }denote the frequencies of edges between

*AA*,

*AC*,

*CA*,

*and*

*CC*interactive cellular pairs. In addition, let

*q*

_{ X|Y }denote the conditional probability of a cell type X given the adjacent vertex as cell type Y, where X and Y represent cellular type of

*A*or

*C*. According to the described exit-entry strategy and the physical meaning of the defined variables, the following identities hold in the structured dynamic network

Since *P*_{
AA
}=*q*_{
A|A
}*P*_{
A
}, *P*_{
A
} *and q*_{
A|A
} are two independent variables, equations (2), (3), and (5) are chosen to describe the evolution of the network.

### Theoretical analysis

In the case of weak selection, *ω* << 1 holds. Therefore, equation (5) represents a fast manifold and equation (2) represents a slow manifold of the dynamics. Our analysis has led to three equilibriums, *P*_{
A
} = 0, 1, *or*
of the dynamic network based on the constraints of the interaction strength parameters *a*, *b*, *c*, *d*, and the number of links k in the situation of weak selection. We summarized the following conditions for the three equilibriums.

Case 1: Stable equilibrium at *P*_{
A
} = 1

*P*

_{ A }= 1, of the system exists if the interaction strength satisfies the following conditions,

where *P*_{A 0} is the initial position of *P*_{
A
}.

*P*

_{ A }= 0 exists while the conditions shown in equation (8) are satisfied.

*P*

_{ A }∈ (0, 1) exists with the constraints on interaction strength and the number of links k satisfies the condition

### Computational simulations

Based on the theoretical analysis, we predicted three types of evolutionary profiles: 1) population of type *A* cells (alternatively activated macrophages) dominates the total cellular population, 2) population of type *C* cells (classically activated macrophages) dominates the total cellular population, or 3) populations of type *A* and type *C* cells reach a dynamic balance in the total cellular population. In addition, the simulations also showed that the evolutionary profiles are related with the interaction strengths, the number of links between cells, and the initial status of the cellular population. To verify the prediction, we designed computer simulations based on the conditions given from equations (7-9) to explore the evolutionary profiles of the network.

### Effects of the interaction strengths on the evolutionary profiles

*k*= 4, and the initial population of type

*A*and type

*C*cells were set as 9900 and 100, respectively. These values were selected based on calculations of the amount of classically versus alternatively activated macrophages at day 3 post-MI. The simulation results demonstrated a dominant population of type

*A*cells (

*P*

_{ A }→ 1) with interaction matrix form

*I*

_{1}in Figure 2, a dominant population with type

*C*cells (

*P*

_{ A }→ 0) with interaction matrix form

*I*

_{2}in Figure 3, and a balanced population of both type

*A*and type

*C*cells (

*P*

_{ A }→ 0.5) with interaction matrix

*I*

_{3}in Figure 4. The domination was achieved within finite generations. These 3 sets of simulations demonstrated three different profiles while sharing the same initial status and the number of links among cells, indicating strong interactions among type

*A*and type

*C*cells to drive the network deviating from the initial dominant type

*A*population in these three simulations. These results have been shown accompanying with the analysis on the evolutionary speed of type

*A*cellular population.

### Effects of initial status on the evolutionary profiles of a dynamic network

*P*

_{ A }was set to 0.99 and 0.4 in the simulations shown in Figures 4 and 5, respectively. In these two simulations, population of type

*A*cells and type

*C*cells reach a dynamic balance despite the significant differences in the initial status.

*ω*= 0.01, but initial status

*P*

_{ A }= 0.99 led to a dominant population of type

*A*cells in figure 6, and

*P*

_{ A }= 0.2 led to a dominant population of type

*C*cells in figure 7. Comparisons of these simulations demonstrated that initial status, together with interaction strengths determine the evolutionary profiles of the network.

### Effects of the number of links on the evolutionary profiles of a dynamic network

*C*cells. Decreasing b or increasing d will lead to decreasing of type

*C*population. In addition, given a fixed parameter b or d, variations of k gave the same trend of evolution but changed evolutionary speed.

All the initial conditions, interaction strength, and the number of links listed in the simulations satisfied the condition associated with the specified equilibrium. The simulations verified predictions on the evolutionary profiles of the network based on our theoretical analysis.

## Discussion

We have used a dynamic network model to study the cellular interactions with an exit-entry strategy. Our results demonstrated that evolutionary profiles of a dynamic network could be stabilized at different states by perturbing the interaction strength matrix, the number of links, and initial status of the network. We have quantified conditions for stable states in terms of interaction strengths, the initial status, and the number of links in the network. Our computer simulations verified predictions of our analytic results. While we used an exit-entry strategy presented by game theory [28, 29], our stability analysis provided not only the stability property but also the convergence states of the system, which is broader than the previous evaluations [28]. We extended analytical stability to the current analysis methods that quantify results using graph theory [24, 26, 30, 31].

Here we have two remarks of our methods. First, we only considered an exit-entry strategy in a structured dynamic network. The exit-entry strategy was chosen because it was the most fundamental and logical cellular function for an initial investigation of the interactions between populations of classically and alternatively activated macrophages post-MI. There exist other evolutionary strategies such as entry-exit, mutation, and imitation. These strategies will need to be considered and potentially incorporated in future models. Secondly, the structure of the dynamic network is fixed by assuming a weak selection, *ω* << 1, and a constant interaction strength matrix. However, stability analysis of the evolutionary strategies with varying structures has more realistic applications to biological systems and has attracted lots of research interest to game theory recently [22, 32]. Stability analysis of dynamic networks with varying structure needs to be included in future research models.

We provide here the first application of a dynamic network model to describe macrophage interactions. We have obtained explicit conditions that determine interaction strength and have established a structure of the network that allows us to predict the stability and equilibrium of the post-MI dynamic network. Our simulation results confirmed the prediction of the stability and the equilibriums of the network.

## Conclusions

We used a new approach to model the cellular interactions between macrophage activation types in the post-MI setting. The results on stability analysis can be used as a useful tool to predict the responses of specific cellular populations.

## Methods

### Stability analysis of the exit-entry dynamic network

*ω*<< 1, equation (5) represents the fast manifold of the evolution and equation (2) represents a slow manifold of the system. Thereby, the equilibrium of

*q*

_{ A|A }can be approximated from equation (5) by ignoring

*ω*dependent terms as

*P*

_{ A }is analyzed by choosing a positive definite Lyapunov function as . If derivative of V is negative semi-definite,

*P*

_{ A }is Lyapunov stable, and the derivative of V can be written as equation (14).

Define the parameters *c*_{0} = (*k* + 1)*a* + (*k*^{2} – *k* − 1)*b* – *c* +(*k*^{2} − 1)*d*

*c*_{1} = (*k* + 1)(*k −* 3)*a −*(2*k*^{2} − 2*k* − 3)*b* −(*k*^{2} – *k* − 3)*c* −(*k* + 1)*d*

and *c*_{2} = −(*k* + 1)(*k* − 2)(*a* − *b* − *c* + *d*) in the case of weak selection(*ω* << 1), stability of *P*_{
A
} is determined by checking the sign of polynomial
. There exist three equilibriums for
i.e., *p*_{
A
} = 0, 1 or
.

Stability of the system can be checked with 3 cases based on the position of the third root and sign of the parameter *c*_{2}. The relations of the three equilibriums have been shown in Figures (2,3,4,5,6,7).

## Declarations

### Acknowledgements

The authors acknowledge grant support from NIH R01 HL75360, AHA Grant-in-Aid 0855119F, and the Morrison Fund (to MLL), grant support from NSF 0644646 and 0602834 (to HCH), and grant support from NSF 0649172 and NIH 1SC2 HL101430 (to YJ).

This article has been published as part of *BMC Systems Biology* Volume 4 Supplement 1, 2010: Proceedings of the ISIBM International Joint Conferences on Bioinformatics, Systems Biology and Intelligent Computing (IJCBS). The full contents of the supplement are available online at http://www.biomedcentral.com/1752-0509/4?issue=S1.

## Authors’ Affiliations

## References

- Cohn JN, Ferrari R, Sharpe N: Cardiac remodeling--concepts and clinical implications: a consensus paper from an international forum on cardiac remodeling. Behalf of an International Forum on Cardiac Remodeling. J Am Coll Cardiol. 2000, 35 (3): 569-582. 10.1016/S0735-1097(99)00630-0View ArticlePubMedGoogle Scholar
- Pfeffer MA, Braunwald E: Ventricular Remodeling After Myocardial Infarction. Experimental observations and clinical implications. Circulation. 1990, 81: 1161-1172.View ArticlePubMedGoogle Scholar
- Lindsey M, Escobar GP, Dobrucki WL, Goshorn KD, Bouges S, Mingoia TJ, McClister MD, Su, Jr. H, Gannon J, MacGillivray C, Lee TR, Sinusas JA: Matrix metalloproteinase-9 gene deletion facilitates angiogenesis after myocardial infarction. Am J Physiol Heart Circ Physiol 2006. 2006, 290: H232-H239. 10.1016/S0735-1097(99)00630-0View ArticleGoogle Scholar
- Lindsey ML: MMP induction and inhibition in myocardial infarction. Heart Fail Rev. 2004, 9 (1): 7-19. 10.1023/B:HREV.0000011390.44039.b7View ArticlePubMedGoogle Scholar
- Yang F, Liu YH, Yang XP, Xu J, Kapke A, Carretero OA: Myocardial infarction and cardiac remodelling in mice. Exp Physiol. 2002, 87 (5): 547-555. 10.1113/eph8702385View ArticlePubMedGoogle Scholar
- Callard R, George AJ, Stark J: Cytokines, chaos, and complexity. Immunity. 1999, 11 (5): 507-513. 10.1016/S1074-7613(00)80125-9View ArticlePubMedGoogle Scholar
- Godin PJ, Buchman TG: Uncoupling of biological oscillators: A complementary hypothesis concerning the pathogenesis of multiple organ dysfunction syndrome. Critical Care Medicine. 1996, 24 (7): 1107-1116. 10.1097/00003246-199607000-00008View ArticlePubMedGoogle Scholar
- Seely AJE, Christou NV: Multiple organ dysfunction syndrome: Exploring the paradigm of complex nonlinear systems. Critical Care Medicine. 2000, 28 (7): 2193-2200. 10.1097/00003246-200007000-00003View ArticlePubMedGoogle Scholar
- Kitano H: Systems Biology: A Brief Overview. Science. 2002, 295 (5560): 1662-1664. 10.1126/science.1069492View ArticlePubMedGoogle Scholar
- Noble D: Modeling the Heart--from Genes to Cells to the Whole Organ. Science. 2002, 295 (5560): 1678-1682. 10.1126/science.1069881View ArticlePubMedGoogle Scholar
- Csete ME, Doyle JC: Reverse Engineering of Biological Complexity. Science. 2002, 295 (5560): 1664-1669. 10.1126/science.1069981View ArticlePubMedGoogle Scholar
- Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh C-H, Minokawa T, Amore G, Hinman V, Arenas-Mena C, et al: A Genomic Regulatory Network for Development. Science. 2002, 295 (5560): 1669-1678. 10.1126/science.1069883View ArticlePubMedGoogle Scholar
- Hunter PJ, Pullan AJ, Smaill BH: Modleign Total Heart Function. Annual Review of Biomedical Engineering. 2003, 5 (1): 147-177. 10.1146/annurev.bioeng.5.040202.121537View ArticlePubMedGoogle Scholar
- Hwang M-W, Matsumori A, Furukawa Y, Ono K, Okada M, Iwasaki A, Hara M, Miyamoto T, Touma M, Sasayama S: Neutralization of interleukin-1[beta] in the acute phase of myocardial infarction promotes the progression of left ventricular remodeling. Journal of the American College of Cardiology. 2001, 38 (5): 1546-1553. 10.1016/S0735-1097(01)01591-1View ArticlePubMedGoogle Scholar
- Vandervelde S, van Luyn MJA, Rozenbaum MH, Petersen AH, Tio RA, Harmsen MC: Stem cell-related cardiac gene expression early after murine myocardial infarction. Cardiovasc Res. 2007, 73 (4): 783-793. 10.1016/j.cardiores.2006.11.030View ArticlePubMedGoogle Scholar
- Sun Y, Zhang JQ, Zhang J, Lamparter S: Cardiac remodeling by fibrous tissue after infarction in rats. Journal of Laboratory and Clinical Medicine. 2000, 135 (4): 316-323. 10.1067/mlc.2000.105971View ArticlePubMedGoogle Scholar
- Mukherjee R, Bruce JA, McClister JDM, Allen CM, Sweterlitsch SE, Saul JP: Time-dependent changes in myocardial structure following discrete injury in mice deficient of matrix metalloproteinase-3. Journal of Molecular and Cellular Cardiology. 2005, 39 (2): 259-268. 10.1016/j.yjmcc.2005.03.012View ArticlePubMedGoogle Scholar
- Troidl C, Möllmann H, Nef H, Masseli F, Voss S, Szardien S, Willmer M, Rolf A, Rixe J, Troidl K: Classically and alternatively activated macrophages contribute to tissue remodelling after myocardial infarction. Journal of Cellular and Molecular Medicine. 2009, 9999 (999A):
- Krause SW, Rehli M, Kreutz M, Schwarzfischer L, Paulauskis JD, Andreesen R: Differential screening identifies genetic markers of monocyte to macrophage maturation. J Leuko Biol. 1996, 60: 510-545.Google Scholar
- Jacob SS, Shastry P, Sudhakaran PR: Monocyte-macrophage differentiation in vitro: modulation by extracellular matrix protein substratum. Molecular and cellular biochemistry. 2002, 233 (1-2): 9-17. 10.1023/A:1015593232347View ArticlePubMedGoogle Scholar
- Bellingan GJ, Caldwell H, Howie SE, Dransfield I, Haslett C: In vivo fate of the inflammatory macrophage during the resolution of inflammation: inflammatory macrophages do not die locally, but emigrate to the draining lymph nodes. J Immunol. 1996, 157 (6): 2577-2585.PubMedGoogle Scholar
- Hernandez M-J: Disentangling nature, strength and stability issues in the characterization of population interactions. Journal of Theoretical Biology. 2009, 261 (1): 107-119. 10.1016/j.jtbi.2009.07.001View ArticlePubMedGoogle Scholar
- Nowak MA, Sigmund K: Evolutionary Dynamics of Biological Games. Science. 2004, 303 (5659): 793-799. 10.1126/science.1093411View ArticlePubMedGoogle Scholar
- Szabó G, Fáth G: Evolutionary games on graphs. Physics Reports. 2007, 446 (4-6): 97-216. 10.1016/j.physrep.2007.04.004.View ArticleGoogle Scholar
- Durán O, Mulet R: Evolutionary prisoner's dilemma in random graphs. Physica D: Nonlinear Phenomena. 2005, 208 (3-4): 257-265. 10.1016/j.physd.2005.07.005.View ArticleGoogle Scholar
- Ohtsuki H, Nowak MA: Evolutionary stability on graphs. Journal of Theoretical Biology. 2008, 251 (4): 698-707. 10.1016/j.jtbi.2008.01.005PubMed CentralView ArticlePubMedGoogle Scholar
- Gerlee P, Anderson ARA: Modelling evolutionary cell behaviour using neural networks: Application to tumour growth. Biosystems. 2009, 95 (2): 166-174. 10.1016/j.biosystems.2008.10.007PubMed CentralView ArticlePubMedGoogle Scholar
- Ohtsuki H, Hauert C, Lieberman E, Nowak MA: A simple rule for the evolution of cooperation on graphs and social networks. Nature. 2006, 441 (7092): 502-505. 10.1038/nature04605PubMed CentralView ArticlePubMedGoogle Scholar
- Ohtsuki H, Pacheco JM, Nowak MA: Evolutionary graph theory: Breaking the symmetry between interaction and replacement. Journal of Theoretical Biology. 2007, 246 (4): 681-694. 10.1016/j.jtbi.2007.01.024PubMed CentralView ArticlePubMedGoogle Scholar
- Ohtsuki H, Nowak MA: Evolutionary games on cycles. Proceedings of the Royal Society B: Biological Sciences. 2006, 273 (1598): 2249-2256. 10.1098/rspb.2006.3576.PubMed CentralView ArticlePubMedGoogle Scholar
- Wild G, Taylor PD: Fitness and evolutionary stability in game theoretic models of finite populations. Proceedings of the Royal Society of London Series B: Biological Sciences. 2004, 271 (1555): 2345-2349. 10.1098/rspb.2004.2862.PubMed CentralView ArticlePubMedGoogle Scholar
- Pacheco JM, Traulsen A, Nowak MA: Active linking in evolutionary games. Journal of Theoretical Biology. 2006, 243 (3): 437-443. 10.1016/j.jtbi.2006.06.027PubMed CentralView ArticlePubMedGoogle Scholar

## Copyright

This article is published under license to BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.