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Table 3 List of reactions and parameter values for the aggregation process

From: An in silico model of the ubiquitin-proteasome system that incorporates normal homeostasis and age-related decline

Reaction

Kinetic rate law

Reactants

Products

Parameter name

Valuea

Aggregation1

k71<#MisP><#MisP-1>/2.0

2MisP

AggP

k 71

1.0E-8 mol-1 s-1

Aggregation2

k71<#MisP><#AggP>

MisP, AggP

2AggP

k 71

1.0E-8 mol-1 s-1

Aggregation3

k72<#MisP_Ub><#MisP_Ub-1>/2.0

2MisP_Ub

AggP

k 72

1.0E-8 mol-1 s-1

â‹®

â‹®

â‹®

â‹®

â‹®

â‹®

Aggregation10

k72<#MisP_Ub8><#MisP_Ub8-1>/2.0

2MisP_Ub8

AggP

k 72

1.0E-8 mol-1 s-1

Aggregation11

k72<#MisP><#MisP_Ub>

MisP, MisP_Ub

AggP

k 72

1.0E-8 mol-1 s-1

â‹®

â‹®

â‹®

â‹®

â‹®

â‹®

Aggregation54

k72<#MisP_Ub7><#MisP_Ub8>

MisP_Ub7, MisP_Ub8

AggP

k 72

1.0E-8 mol-1 s-1

SequesteringOfAggregates

k73<#AggP>

AggP

SeqAggP

k 73

1.0E-3 s-1

ProteasomeInhibition

k74<#AggP>

AggP, Proteasome

AggP_Proteasome

k 74

1.0E-5 s-1

  1. amol, number of molecules