Skip to main content

Advertisement

Table 1 Summary of fundamental network concepts in real network applications.

From: Understanding network concepts in modules

  Fly Protein Yeast Protein Yeast (Weighted) Yeast (Unweighted)
Concept Proper Grey Proper Grey Proper Grey Proper Grey
Factorizability .82 (.086) .170 .85 (.100) .200 .73 (.084) .180 .62 (.130) .110
Density .21 (.074) .017 .28 (.120) .026 .08 (.056) .005 .40 (.150) .024
Centralization .18 (.091) .052 .20 (.055) .036 .10 (.026) .021 .41 (.110) .140
Heterogeneity .35 (.130) .460 .36 (.140) .430 .56 (.066) .580 .51 (.097) .830
Mean Cluster Coef. .28 (.110) .050 .36 (.120) .093 .13 (.072) .032 .72 (.087) .370
Mean Conformity .45 (.076) .130 .51 (.120) .150 .26 (.084) .062 .63 (.100) .120
  1. Each network contained several proper modules. Non-module genes were grouped into a single (improper) grey module. For each concept, we report the mean and standard error across the proper modules. A more detailed table presenting network concepts in each module is also provided [see Additional file 1].