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Table 2 The list of biomass components for the initial biomass function. [See Additional file 1] for the additional components added for the extended biomass function and [see Additional file 5] for the explicit names and molecular formulas.

From: Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ 661 and proposing alternative drug targets

Biomass composition for growth of iNJ 661
mmol/gDW Abbreviation  
0.40596 ala-L  
0.02261 cys-L  
0.12031 asp-L  
0.09001 glu-L  
0.04810 phe-L  
0.33581 gly  
0.04062 his-L  
0.08773 ile-L  
0.03909 lys-L  
0.20471 leu-L amino acids
0.03489 met-L  
0.04770 asn-L  
0.13803 pro-L  
0.05812 gln-L  
0.12042 arg-L  
0.14340 ser-L  
0.13571 thr-L  
0.20583 val-L  
0.02012 trp-L  
0.03176 tyr-L  
0.13903 amp  
0.25095 cmp  
0.24365 gmp  
0.13160 ump nucleic acids
0.00349 damp  
0.00666 dcmp  
0.00666 dgmp  
0.00365 dtmp  
0.00797 tre  
0.00118 tat  
0.00125 pat  
0.00114 sl1  
0.00649 tre6p  
0.00647 tres  
0.16315 glc-D  
0.09507 man sugars
0.02172 rib-D carbohydrates
0.05547 gal peptidoglycans
0.23018 acgam1p  
0.00279 uamr  
0.00101 uaaAgla  
0.00101 uaaGgla  
0.00099 uaagmda  
0.00098 ugagmda  
0.02536 glyc  
0.01885 peptido_TB1  
0.01885 peptido_TB2  
0.00073 arabinanagalfragund  
0.00168 Ac1PIM1  
0.00149 Ac1PIM2  
0.00134 Ac1PIM3  
0.00121 Ac1PIM4  
0.00127 Ac2PIM2  
0.00208 PIM1  
0.00179 PIM2  
0.00157 PIM3  
0.00140 PIM4  
0.00127 PIM5  
0.00115 PIM6  
0.00406 pe160  
0.00586 clpn160190 fatty acids
0.01219 ttdca glycolipids
0.23515 hdca phospholipids
0.01094 hdcea  
0.03484 ocdca  
0.00985 ocdcea  
0.09580 mocdca  
0.01568 arach  
0.00784 mbhn  
0.05835 hexc  
0.00724 pa160  
0.00680 pa160190  
0.00641 pa190190  
0.00649 pg160  
0.00613 pg160190  
0.00581 pg190  
0.01100 mycolate  
0.00334 kmycolate  
0.00329 mkmycolate  
0.00337 mmmycolate  
0.00111 tmha1 mycolic acids
0.00110 tmha2 phenolic glycolipids
0.00110 tmha3 mycocerosates
0.00110 tmha4 mycobactin
0.00645 phdca  
0.00118 mfrrppdima  
0.00140 mcbts  
0.00150 fcmcbtt  
0.00027 pdima  
0.00026 ppdima  
60.00000 atp  
60.00000 adp (product) growth associated maintenance
60.00000 pi (product)