Table 2 The list of biomass components for the initial biomass function. [See Additional file 1] for the additional components added for the extended biomass function and [see Additional file 5] for the explicit names and molecular formulas.
Biomass composition for growth of iNJ 661 | ||
|---|---|---|
mmol/gDW | Abbreviation | |
0.40596 | ala-L | |
0.02261 | cys-L | |
0.12031 | asp-L | |
0.09001 | glu-L | |
0.04810 | phe-L | |
0.33581 | gly | |
0.04062 | his-L | |
0.08773 | ile-L | |
0.03909 | lys-L | |
0.20471 | leu-L | amino acids |
0.03489 | met-L | |
0.04770 | asn-L | |
0.13803 | pro-L | |
0.05812 | gln-L | |
0.12042 | arg-L | |
0.14340 | ser-L | |
0.13571 | thr-L | |
0.20583 | val-L | |
0.02012 | trp-L | |
0.03176 | tyr-L | |
0.13903 | amp | |
0.25095 | cmp | |
0.24365 | gmp | |
0.13160 | ump | nucleic acids |
0.00349 | damp | |
0.00666 | dcmp | |
0.00666 | dgmp | |
0.00365 | dtmp | |
0.00797 | tre | |
0.00118 | tat | |
0.00125 | pat | |
0.00114 | sl1 | |
0.00649 | tre6p | |
0.00647 | tres | |
0.16315 | glc-D | |
0.09507 | man | sugars |
0.02172 | rib-D | carbohydrates |
0.05547 | gal | peptidoglycans |
0.23018 | acgam1p | |
0.00279 | uamr | |
0.00101 | uaaAgla | |
0.00101 | uaaGgla | |
0.00099 | uaagmda | |
0.00098 | ugagmda | |
0.02536 | glyc | |
0.01885 | peptido_TB1 | |
0.01885 | peptido_TB2 | |
0.00073 | arabinanagalfragund | |
0.00168 | Ac1PIM1 | |
0.00149 | Ac1PIM2 | |
0.00134 | Ac1PIM3 | |
0.00121 | Ac1PIM4 | |
0.00127 | Ac2PIM2 | |
0.00208 | PIM1 | |
0.00179 | PIM2 | |
0.00157 | PIM3 | |
0.00140 | PIM4 | |
0.00127 | PIM5 | |
0.00115 | PIM6 | |
0.00406 | pe160 | |
0.00586 | clpn160190 | fatty acids |
0.01219 | ttdca | glycolipids |
0.23515 | hdca | phospholipids |
0.01094 | hdcea | |
0.03484 | ocdca | |
0.00985 | ocdcea | |
0.09580 | mocdca | |
0.01568 | arach | |
0.00784 | mbhn | |
0.05835 | hexc | |
0.00724 | pa160 | |
0.00680 | pa160190 | |
0.00641 | pa190190 | |
0.00649 | pg160 | |
0.00613 | pg160190 | |
0.00581 | pg190 | |
0.01100 | mycolate | |
0.00334 | kmycolate | |
0.00329 | mkmycolate | |
0.00337 | mmmycolate | |
0.00111 | tmha1 | mycolic acids |
0.00110 | tmha2 | phenolic glycolipids |
0.00110 | tmha3 | mycocerosates |
0.00110 | tmha4 | mycobactin |
0.00645 | phdca | |
0.00118 | mfrrppdima | |
0.00140 | mcbts | |
0.00150 | fcmcbtt | |
0.00027 | pdima | |
0.00026 | ppdima | |
60.00000 | atp | |
60.00000 | adp (product) | growth associated maintenance |
60.00000 | pi (product) | |