Table 1 Performance of the different module finding algorithms on the S. cerevisiae osmotic shock data
From: Identification of functional modules using network topology and high-throughput data
Solution | No. of modules | Total nodes | Average size | Expression homogeneity | Clustering coefficient | Edge density | No. of connected components |
|---|---|---|---|---|---|---|---|
MATISSE | 20 | 2107 | 105.35 | 0.361 | 0.073 | 0.035 | 1.00 |
Co-clustering | 19 | 1991 | 104.79 | 0.354 | 0.035 | 0.010 | 89.67 |
CLICK | 20 | 1988 | 99.40 | 0.438 | 0.030 | 0.011 | 77.61 |
Random connected | 20 | 2107 | 105.35 | 0.063 | 0.050 | 0.036 | 1.00 |
Random | 20 | 2105 | 105.35 | 0.033 | 0.004 | 0.003 | 89.78 |