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Table 2 Average sizes of classes compared with random model F

From: On cycles in the transcription network of Saccharomyces cerevisiae

 

IN-LSCC

LSCC

OUT-LSCC

SIMPLE

SSCC

INT

EXCP

 

Luscombe

actual

9

25

68

38

2

0

2

average

16.2

40.7

45.0

34.1

1.25

2.9

3.15

p-value

0.043

0.041

0.004

0.081

0.30

0.086

0.555

 

Yu

actual

20

63

114

77

5

6

5

average

29.0

66.0

107.0

71.0

0.7

6.9

4.9

p-value

0.032

0.35

0.19

0.081

0.022

0.48

0.48

 

Balaji

actual

21

60

58

14

0

3

1

average

19.8

72.1

47.7

14.8

0.2

1.6

0.8

p-value

0.39

0.006

0.011

0.45

0.99

0.23

0.46

  1. See explanations for Table 1. Generation of random graphs was altered to achieve the same number of feedforward loops as in the original network.