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Table 3 Average sizes of classes compared with random model B

From: On cycles in the transcription network of Saccharomyces cerevisiae

  IN-LSCC LSCC OUT-LSCC SIMPLE SSCC INT EXCP
  Luscombe
actual 9 25 68 38 2 0 2
average 17.5 43.0 42.5 33.4 0.85 2.7 2.7
p-value 0.018 0.017 0.001 0.05 0.26 0.105 0.57
  Yu
actual 20 63 114 77 5 6 5
average 33.7 67.5 99.7 71.8 0.43 7.4 4.9
p-value 0.002 0.26 0.025 0.12 0.013 0.4 0.47
  Balaji
actual 21 60 58 14 0 3 1
average 22.6 74.2 43.8 14.4 0.2 1.4 0.7
p-value 0.39 0.003 0.000 0.56 0.91 0.18 0.46
  1. See explanations for Table 1. Generation of random graphs was altered to achieve the same number of bi-fan motifs (a pair of TFs regulating the same pair of targets) as in the original network.