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Table 3 Average sizes of classes compared with random model B

From: On cycles in the transcription network of Saccharomyces cerevisiae

 

IN-LSCC

LSCC

OUT-LSCC

SIMPLE

SSCC

INT

EXCP

 

Luscombe

actual

9

25

68

38

2

0

2

average

17.5

43.0

42.5

33.4

0.85

2.7

2.7

p-value

0.018

0.017

0.001

0.05

0.26

0.105

0.57

 

Yu

actual

20

63

114

77

5

6

5

average

33.7

67.5

99.7

71.8

0.43

7.4

4.9

p-value

0.002

0.26

0.025

0.12

0.013

0.4

0.47

 

Balaji

actual

21

60

58

14

0

3

1

average

22.6

74.2

43.8

14.4

0.2

1.4

0.7

p-value

0.39

0.003

0.000

0.56

0.91

0.18

0.46

  1. See explanations for Table 1. Generation of random graphs was altered to achieve the same number of bi-fan motifs (a pair of TFs regulating the same pair of targets) as in the original network.
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BMC Systems Biology

ISSN: 1752-0509

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