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Table 4 Average out-degrees compared with three random models

From: On cycles in the transcription network of Saccharomyces cerevisiae

  in LSCC among all TFs
  OUT OUTF OUT OUTF
model R F B R F B   
      Luscombe   
actual   128.08    4.92   49.67 1.79
average 97.68 100.67 96.55 3.88 3.97 3.85 - -
p-value 0.003 0.013 0.001 0.003 0.009 0.001 - -
      Yu   
actual   85.54    6.35   29.27 2.01
average 75.08 79.26 75.61 5.68 5.96 5.71 - -
p-value 0.030 0.148 0.032 0.037 0.169 0.038 - -
      Balaji   
actual   146.78    4.87   81.99 3.12
average 131.61 134.80 130.69 5.31 5.43 5.26 - -
p-value 0.002 0.015 0.002 0.005 0.031 0.009 - -
  1. In this table, we have separate columns for results of random tests according to model R, F and B respectively. Columns OUT give the average number of targets, and columns OUTF give the average number of targets that are TFs. Note that in random networks the number of targets is the same for each TFs, so the average values for all TFs are always the same.
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BMC Systems Biology

ISSN: 1752-0509

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