From: Three factors underlying incorrect in silico predictions of essential metabolic genes
Organism | Overall Mean Connectivity | Experimental media | Mean connectivity of TP genes | Mean connectivity of FN genes |
---|---|---|---|---|
E. coli | 2.97 | glucose MM | 2.13 | 2.15 |
 |  | glycerol MM | 2.10 | 2.01 |
S. cerevisiae | 1.80 | glucose | 2.38 | 1.36 |
 |  | glucose (anaerobic) | 2.64 | 1.40 |
 |  | galactose | 2.32 | 1.32 |
 |  | glycerol | 2.36 | 1.31 |
 |  | ethanol | 2.04 | 1.35 |
 |  | rich | 3.39 | 1.44 |
H. pylori | 1.36 | rich | 1.14 | 1.05 |
S. aureus | 1.54 | rich (Forsyth et al.) | 1.29 | 1.04 |
 |  | rich (Ji et al.) | 1.00 | 1.00 |
M. tuberculosis | 1.72 | Middlebrook | 1.85 | 1.42 |
B. subtilis | 1.96 | rich | 2.02 | 1.68 |