Table 4 The mean overcoupling counts for each organism and media condition.
From: Three factors underlying incorrect in silico predictions of essential metabolic genes
Organism | Experimental media | TP mean overcoupling count | FN mean overcoupling count | Corrected FN mean overcoupling count |
|---|---|---|---|---|
E. coli | glucose MM | 65.96 | 45.79 | 45.55 |
| Â | glycerol MM | 65.10 | 49.70 | 50.85 |
S. cerevisiae | glucose | 84.87 | 32.05 | 48.55 |
| Â | glucose (anaerobic) | 99.74 | 33.93 | 53.19 |
| Â | galactose | 81.65 | 31.13 | 47.80 |
| Â | glycerol | 80.47 | 32.03 | 49.63 |
| Â | ethanol | 70.73 | 29.62 | 40.88 |
| Â | rich | 149.57 | 33.97 | 63.51 |
H. pylori | rich | 13.58 | 15.62 | 16.50 |
S. aureus | rich (Forsyth et al.) | 16.29 | 12.85 | 16.88 |
| Â | rich (Ji et al.) | 26.00 | 13.60 | 13.60 |
M. tuberculosis | Middlebrook | 70.21 | 39.55 | 47.64 |
B. subtilis | rich | 99.35 | 35.16 | 40.74 |