From: Extracting expression modules from perturbational gene expression compendia
 |  |  |  |  |  | Top module | ||
---|---|---|---|---|---|---|---|---|
GO category | # genes | method | # modules | tp | R | p | tp | P |
conjugation (GO:0000746) | 117 | ENIGMA | 10 | 43 | 0.37 | 3.98E-29 | 23 | 0.62 |
 |  | SAMBA | 17 | 46 | 0.39 | 4.10E-29 | 24 | 0.55 |
 |  | ISA | 11 | 42 | 0.36 | 1.55E-15 | 18 | 0.28 |
ergosterol biosynthesis (GO:0006696) | 26 | ENIGMA | 4 | 14 | 0.54 | 1.28E-12 | 9 | 0.23 |
 |  | SAMBA | 3 | 16 | 0.62 | 1.93E-14 | 15 | 0.08 |
 |  | ISA | 1 | 11 | 0.42 | 1.23E-19 | 11 | 0.39 |
cell wall biogenesis (GO:0042546) | 32 | ENIGMA | 1 | 8 | 0.25 | 2.35E-06 | 8 | 0.08 |
 |  | SAMBA | 4 | 9 | 0.28 | 6.89E-06 | 9 | 0.06 |
 |  | ISA | 1 | 7 | 0.22 | 6.32E-07 | 7 | 0.13 |
iron ion homeostasis (GO:0055072) | 38 | ENIGMA | 4 | 15 | 0.39 | 2.35E-16 | 11 | 0.37 |
 |  | SAMBA | 13 | 16 | 0.42 | 3.99E-18 | 13 | 0.33 |
 |  | ISA | 2 | 13 | 0.34 | 8.43E-14 | 13 | 0.15 |
oxidative phosphorylation (GO:0006119) | 38 | ENIGMA | 6 | 23 | 0.61 | 3.02E-12 | 9 | 0.35 |
 |  | SAMBA | 11 | 30 | 0.79 | 2.34E-32 | 20 | 0.44 |
 |  | ISA | 2 | 8 | 0.21 | 1.20E-05 | 6 | 0.14 |