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Table 3 Target genes that shRNA were significantly depleted.

From: Systems analysis of quantitative shRNA-library screens identifies regulators of cell adhesion

Gene

P-value

T-statistics

Entrez Gene

Significant GO term

GO category

shRNA sequence

ABCB7

0.0019

-16.2715

22

heme transporter activity

MF

5'GAATGCCACATGGATATGACACCCAAG3'

RFXANK

0.0027

-13.5118

8625

humoral immune response

BP

5'GGAGAGATTGAGACCGTTCGCTTCCTG3'

CD28

0.0031

-12.5570

940

humoral immune response

BP

5'GAACTGTTGGATTTACCCTGGCACGTG3'

ASMT

0.0035

-11.8293

438

melatonin biosynthesis; acetylserotonin O-methyltransferase activity

BP/MF

5'GCATGACTGGCCAGACGACAAAGTCCA3'

PPYR1

0.0039

-11.2743

5540

neuropeptide Y receptor activity

MF

5'GCATCCATTTGCATCGTGAAGACTGGC3'

CKB

0.0053

-9.6779

1152

creatine kinase activity

MF

5'GCTGCGGGCAGGTGTCGATATCAAGCT3'

SPOCK3

0.0066

-8.6420

50859

enzyme inhibitor activity

MF

5'TAGTGCTTGGGATCGTACATGTTAATT3'