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Table 1 The main structure of CSML.

From: Systematic reconstruction of TRANSPATH data into Cell System Markup Language

<csml:project>

   <csml:model modelID="" modelVersionID="">

      <csml:entitySet>

         <csml:entity>*

      </csml:entitySet>{0,1}

      <csml:processSet>

         <csml:process id="" name="" type="">*

            <connectorList><connector/>+</connectorList>{0,1}

      </csml:processSet>{0,1}

      <csml:factSet>

         <csml:fact>*

         </csml:factSet>{0,1}

         <csml:simulationProperty>{0,1}

         <csml:biologicalProperty/>{0,1}

   </csml:model>

   <csml:subModelSet/>

   <csml:globalSimulatinProperty/>

   <csml:globalViewProperty/>

   <csml:globalAnimationProperty/>

   <csml:chartSet/>

   <csml:viewSet/>

   <csml:globalBiologicalProperty/>

   <csml:references/>

</csml:project>

  1. The tags explained in the context are shown in black. On the other hand, the grey part is not explained in the manuscript, which is mainly to describe the global properties for the project level.