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Table 4 Contingency table for comparing learned networks to KEGG pathways.
From:
Seeded Bayesian Networks: Constructing genetic networks from microarray data
Learned Network
Ideal (KEGG pathway)
Edge in network
Yes
No
Yes
TP = |E
L
|
⋂
|E
I
|
FN = |E
I
| - TP
No
FP = |E
L
| - TP
TN = [(|V
I
|•|V
I
- 1|)/2] - FN
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