BMC Systems Biology

Table 5 Summary of large-scale single gene deletion evaluation of S. cerevisiae iIN800.

From: The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism

	Minimal media on					Rich media
Evaluation	Glucose*	Glucose**	Galactose	Glycerol	Ethanol	YPD	Total
TP	468	469	461	461	463	567	2889
TN	23	23	20	17	21	38	142
FP	37	37	42	45	43	21	225
FN	14	13	19	19	15	56	136
Number of deletions	542	542	542	542	542	682	3392
Positive prediction rate	92.67	92.69	91.65	91.11	91.50	96.43	92.77
Negative prediction rate	62.16	63.89	51.28	47.22	58.33	40.43	51.08
Accuracy	90.59	90.77	88.75	88.19	89.30	88.71	89.36
Sensitivity	97.10	97.30	96.04	96.04	96.86	91.01	95.50
Selectivity	38.33	38.33	32.26	27.42	32.81	64.41	38.69
Geometric mean	61.01	61.07	55.66	51.32	56.38	76.56	60.79

* = Aerobic growth, ** = Anaerobic growth
TP = true positive, TN = true negative, FP = false positive, FN = false negative.

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