Table 6 Top thirty Reporter Metabolites calculated from various perturbations. The Reporter Metabolite algorithm was performed with iIN800 and iFF708.
Oxidative phase1 | Reductive building phase1 | Reductive charging Phase1 | |||
|---|---|---|---|---|---|
iIN800 | iFF708 | iIN800 | iFF708 | iIN800 | iFF708 |
AMP | IMP | AMPM | AMPM | Dodecanoyl-CoA* | Acyl-CoA |
IMP | Xanthosine 5'-phosphate | PyrophosphateM | tRNAM | Decanoyl-CoA* | alpha,alpha-Trehalose |
Pyrophosphate | L-Methionine | ATPM | PyrophosphateM | Trans-3-C16-CoA* | Glycogen |
L-Methionine | 5-Phospho-alpha-D-ribose 1-PP | tRNAM | Porphobilinogen | Trans-3-C18-CoA* | alpha,alpha'-Trehalose 6-phosphate |
Xanthosine 5'-phosphate | L-Aspartate | H+M | L-TryptophanM | Trans-3-C14-CoA* | alpha-D-Glucose |
ATP | Sulfate | NADHM | L-Tryptophanyl-tRNA(Trp)M | alpha,alpha-Trehalose | Oxalosuccinate |
5-Phospho-alpha-D-ribose 1-PP | Homocysteine | Porphobilinogen | Dolichyl beta-D-mannosyl-P | Glycogen | 3-Oxoacyl-CoA |
L-Serine | AMP | Dolichyl beta-D-mannosyl-P | Mannan | alpha,alpha'-Trehalose 6-phosphate | a Long-chain carboxylic acid |
L-Aspartate | H+EXT | L-Tryptophanyl-tRNA(Trp)M | Xanthine | Oxalosuccinate | Carnitine |
H+EXT | 3-Phosphonooxypyruvate | Mannan | L-Asparaginyl-tRNA(Asn)M | Trans-2-C14-CoA* | alpha-D-Glucose 6-phosphate |
Homocysteine | N6-(L-1,3-Dicarboxypropyl)-L-lysine | tRNA(Ile)M* | H+M | Trans-2-C16-CoA* | UDPglucose |
Sulfate | 5,10-Methylenetetrahydrofolate | L-Isoleucyl-tRNA(Ile)M* | Dolichyl phosphate | Trans-2-C18-CoA* | Isocitrate |
L-Glutamine | Aminoimidazole ribotide | tRNA(Thr)M* | all-trans-Nonaprenyl-PP | 3-keto-Dodecanoyl-CoA* | D-Glucose 1-phosphate |
L-Cysteine | L-Cystathionine | L-Threonyl-tRNA(Thr)M* | NADHM | 3-keto-Decanoyl-CoA* | CoAM |
L-Asparagine | L-Serine | Xanthine | ATPM | 3-keto-Octanoyl-CoA* | Acetyl-CoAM |
S-Adenosyl-L-methionine | Uracil | Dolichyl phosphate | D-Mannose 6-phosphate | 3-keto-Hexanoyl-CoA* | CoA |
Uracil | Sulfite | all-trans-Nonaprenyl-PP | UbiquinolM | 3-keto-Butanoyl-CoA* | O-Acetylcarnitine |
5,10-Methylenetetrahydrofolate | 5-amino-4-imidazolecarboxylate | L-Asparaginyl-tRNA(Asn)M | Ubiquinone-9M | Dodecanoic_acid* | Succinate |
3-Phosphonooxypyruvate | 2-Hydroxybutane-1,2,4-tricarboxylate | tRNA(Phe)M* | CO2M | Carnitine | (S)-3-Hydroxy-3-methylglutaryl-CoA |
N6-(L-1,3-Dicarboxypropyl)-L-lysine | S-Adenosyl-L-methionine | L-Phenylalanyl-tRNA(Phe)M* | Guanosine | alpha-D-Glucose | NAD+ |
L-Cystathionine | L-Asparagine | Intermediate_Methylzymosterol_II | IsocitrateM | Trans-2-4-diene-CoA* | H2O2 |
NH3 | 5-Phosphoribosylamine | Intermediate_Zymosterol_II | GTPM | Isocitrate | Malate |
tRNA(Phe)* | GlycineM | UbiquinolM | GDPM | alpha-D-Glucose 6-phosphate | Maltose |
L-Phenylalanyl-tRNA(Phe)* | Guanine | D-Mannose 6-phosphate | ITPM | UDPglucose | (3S)-3-Hydroxyacyl-CoA |
Tetrahydrofolate | L-Histidine | Ubiquinone-9M | IDPM | D-Glucose 1-phosphate | GLCxt |
Guanine | N1-(5'-phosphoribosyl)acetamidine | tRNA(Asp)M* | ITP | O-Acetylcarnitine | Glycerone phosphate |
Sulfite | Tetrahydrofolate | L-Aspartyl-tRNA(Asp)M* | IDP | Tetradecanoyl-CoA* | O-AcetylcarnitineM |
L-Histidine | alpha-D-Glutamyl phosphate | tRNA(Pro)M* | Phosphatidate | Decanoic_acid* | CarnitineM |
5-amino-4-imidazolecarboxylate | HomoisocitrateM | L-Prolinyl-tRNA(Pro)M* | C100ACPm | (S)-3-Hydroxy-3-methylglutaryl-CoA | D-Galactose |
GlycineM | GMP | Pyrophosphate | Dodecanoyl-ACPM | H2O2 | SuccinateM |
* Metabolite is contained in iIN800 only 1 = data from Tu, B. P., A. Kudlicki, et al. (2005) | |||||
Carbon- and Nitrogen-limited 2 | Aerobic and Anaerobic 2 | Temperature(30°C and 15°C) 3 | |||
iIN800 | iFF708 | iIN800 | iFF708 | iIN800 | iFF708 |
Glyoxylate | Glyoxylate | Oxygen | Ferricytochrome cM | IMP | IMP |
GLUxt | L-Phenylalanine | Ferricytochrome cM | Ferrocytochrome cM | Tetrahydrofolate | Tetrahydrofolate |
Isocitrate | GLUxt | Ferrocytochrome cM | Ubiquinone-9M | alpha,alpha-Trehalose | alpha,alpha-Trehalose |
ALAxt | Isocitrate | Ubiquinone-9M | Oxygen | Hexadecanoyl-9-ene-CoA* | D-Erythrose 4-phosphate |
Malate | ALAxt | UbiquinolM | UbiquinolM | Octadecanoyl-9-ene-CoA* | L-OrnithineM |
Allantoate | Allantoate | ADPM | ADPM | Tetradecanoyl-9-ene-CoA* | Xanthosine 5'-phosphate |
SERxt | Malate | H+M | H+M | D-Erythrose 4-phosphate | N6-(L-1,3-Dicarboxypropyl)-L-lysine |
L-Alanine | L-Alanine | Dodecanoyl-CoA* | FADH2M | L-OrnithineM | NADH |
Decanoyl-CoA* | SERxt | FumarateM | FumarateM | Xanthosine 5'-phosphate | URIxt |
ASNxt | ASNxt | OrthophosphateM | OrthophosphateM | N6-(L-1,3-Dicarboxypropyl)-L-lysine | 1-Phosphatidyl-1D-myo-inositol 4-P |
GLNxt | GLNxt | FADH2M | Sphinganine 1-phosphate | URIxt | Homocysteine |
ILExt | ILExt | Hexadecanoyl-9-ene-CoA* | ATPM | Homocysteine | 1-Phosphatidyl-D-myo-inositol 4,5-PP |
VALxt | VALxt | Octadecanoyl-9-ene-CoA* | Fumarate | Octadecanoyl-CoA | N-Acetyl-L-glutamateM |
Trans-2-C161-CoA* | Ferricytochrome cM | Tetradecanoyl-9-ene-CoA* | Glyoxylate | N-Acetyl-L-glutamateM | Dihydrofolate |
Trans-2-C181-CoA* | Ferrocytochrome cM | Sphinganine 1-phosphate | Isocitrate | Dihydrofolate | N2-Acetyl-L-ornithineM |
Trans-2-C141-CoA* | PHExt | Phytosphingosine 1-phosphate | ERGOSTxt | N2-Acetyl-L-ornithineM | Anthranilate |
PHExt | L-Asparagine | Tetradecanoyl-Co | ZYMSTxt | Anthranilate | S-Adenosyl-L-homocysteine |
Ferricytochrome cM | Allantoin | Fumarate | NAD+ | Hexadecanoyl-9-ene_acid* | UREAxt |
Ferrocytochrome cM | LEUxt | Trans-2-C161-CoA* | FADM | Octadecanoyl-9-ene_acid* | L-Aspartate |
FRUxt | FRUxt | Trans-2-C181-CoA* | 6-Phospho-D-gluconate | S-Adenosyl-L-homocysteine | N(pai)-Methyl-L-histidine |
Allantoin | Succinate | Trans-2-C141-CoA* | 1,3-Diaminopropane | NADH | Adenosine 3',5'-bisphosphate |
LEUxt | HISxt | Glyoxylate | sn-Glycerol 3-phosphate | UREAxt | 4-imidazolecarboxylate |
Succinate | TYRxt | sn-Glycerol 3-phosphate | O-Acetylcarnitine | L-Aspartate | 3-Methyl-2-oxobutanoateM |
HISxt | METxt | Isocitrate | Ethanol | 1-Phosphatidyl-D-myo-inositol-3-P | Tetrahydrofolyl-[Glu](n) |
Dodecanoyl-CoA* | GLYxt | ERGOSTxt | DIPEPxt | N(pai)-Methyl-L-histidine | 2-Phenylacetamide |
PROxt | ASPxt | ZYMSTxt | Dipeptide | Adenosine 3',5'-bisphosphate | Phenylacetic acid |
alpha-D-Mannose | GLCxt | 1,3-Diaminopropane | OPEPxt | L-Asparagine | Indole-3-acetamide |
Trans-3-C16-CoA* | L-Tyrosine | 6-Phospho-D-gluconate | Oligopeptide | C24-CoA* | Indole-3-acetate |
Trans-3-C18-CoA* | PROxt | H2O2 | PEPTxt | 1-(5-Phospho-D-ribosyl)-5-amino | Urea-1-carboxylate |
Trans-3-C14-CoA* | alpha-D-Mannose | Trans-3-C16-CoA* | Sphinganine | 3-Methyl-2-oxobutanoateM | PhosphatidylserineM |