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Table 1 Properties of metabolic reconstruction of P. putida KT2440

From: A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: i JN746 as a cell factory

Reconstruction & Organism iJN746
P. putida
iAF1260
E. coli
iYO844
B. subtilis
iNJ661
M. tuberculosis
iMO1056
P. aeruginosa
Protein coding genes per genome 5,350a 4,464b 4,106a 3,989a 5669
SKI valuec 0.74 55.87 4.97 7.84 5.12
Genes (% of genome) 746 (14%) 1260 (28%) 844 (21%) 661 (17%) 1056 (18,6%)
Reactions 950 2077 1020 939 883
Gene-reaction associated 810 1919 904 723 839
Non-gene- associated network reaction (% of network reactions) 140 (17%) 158 (8%) 116 (13%) 116 (16%) 44 (5%)
Exchange reactions 90 304 225 88 -
Metabolites 911 1039 988 828 -
  1. Properties of metabolic reconstruction of P. putida KT2440 were compared with recently published metabolic reconstructions of E. coli MG1655 (i AF1260 [36]), B. subtilis (i YO844 [37]), and M. tuberculosis H37Rv (i NJ661 [39]) and P. aeruginosa (iMO1056 [64]). a taken from KEGG [57]; b based on Riley et al. [98]; c Species Knowledge Index (SKI) was calculated as described in [65].