Table 1 Properties of metabolic reconstruction of P. putida KT2440
From: A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: i JN746 as a cell factory
Reconstruction & Organism | iJN746 P. putida | iAF1260 E. coli | iYO844 B. subtilis | iNJ661 M. tuberculosis | iMO1056 P. aeruginosa |
|---|---|---|---|---|---|
Protein coding genes per genome | 5,350a | 4,464b | 4,106a | 3,989a | 5669 |
SKI valuec | 0.74 | 55.87 | 4.97 | 7.84 | 5.12 |
Genes (% of genome) | 746 (14%) | 1260 (28%) | 844 (21%) | 661 (17%) | 1056 (18,6%) |
Reactions | 950 | 2077 | 1020 | 939 | 883 |
Gene-reaction associated | 810 | 1919 | 904 | 723 | 839 |
Non-gene- associated network reaction (% of network reactions) | 140 (17%) | 158 (8%) | 116 (13%) | 116 (16%) | 44 (5%) |
Exchange reactions | 90 | 304 | 225 | 88 | - |
Metabolites | 911 | 1039 | 988 | 828 | - |