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Table 2 Carbon sources enabling growth of i JN746 in i M9 mineral medium.

From: A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: i JN746 as a cell factory

Class

Compound

Class

Compound

Aromatic and related compounds

 

Amino acids

 
 

Protocatechuate

 

L-Arginine

 

Caffeate

 

L-Aspartate

 

Oxoadipate

 

L-Glutamate

 

4-Hydroxybenzoate

 

L-Glycine

 

Benzoate

 

L-Histidine

 

Catechol

 

L-Isoleucine

 

Coniferyl alcohol

 

L-Leucine

 

Ferulate

 

L-Lysine

 

Gallate

 

L-Proline

 

m-Xylene

 

L-Serine

 

Nicotinate

 

L-Threonine

 

p-Xylene

 

L-Valine

 

Phenylacetate

Organics acids

 
 

L-Phenylalanine

 

α-Ketoglutarate

 

Quinate

 

Citrate

 

p-Coumarate

 

Fumarate

 

Toluene

 

Isocitrate

 

L-Tyrosine

 

D-Lactate

 

Vanillin

 

L-Lactate

 

Vanillate

 

Malate

Fatty acids

  

Succinate

 

Acetate

Carbohydrates

 
 

Decanoate

 

2-ketogluconate

 

Dodecanoate

 

D-Fructose

 

Hexadecanoate

 

D-Glucose

 

Hexanoate

 

D-Gluconate

 

Octanoate

 

D-Ribose

 

Propionate

Miscellaneous compounds

 
 

Tetradecanoate

 

4-Aminobuturate

Polyalcohols and glycols

  

Glycine betaine

 

Glyceraldehyde

 

Ornithine

 

Glycerol

 

Choline

 

Glycolate

 

Choline sulfate

  1. Carbon sources enabling growth of i JN746 in i M9 mineral medium. The compounds were grouped based their structural characteristics. A complete list of carbon sources tested, along with possible nitrogen and sulfur sources, as well as bibliographic support can be found in the Additional file 2.