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Table 2 Biolog carbon sources inconsistently predicted by iAbaylyiv1 and corresponding corrections

From: Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data

Unpredicted Biolog carbon sources 21
Prediction corrected by addition of transporter 7
   3-ketobutyrate  
   butyrate  
   D-aspartate  
   L-asparagine  
   L-glutamine  
   propionate  
   pyruvate  
Prediction corrected by addition of degradation pathway 2
   sorbate  
   tricarballylate  
Biolog result contradicted by additional experiment 5
   2-ketobutyrate  
   alpha-D-glucose  
   D-malate  
   D-xylose  
   L-arabinose  
Uncorrected inconsistencies – no relevant pathway found 7
   2-hydroxybutyrate  
   bromo-succinate  
   D-lactate methyl ester  
   methylpyruvate  
   tween 20  
   tween 40  
   tween 80  
Unpredicted Biolog non carbon sources 5
Biolog result contradicted by additional experiment 1
   4-hydroxybenzoate *  
Uncorrected inconsistencies 4
   D-fructose  
   D-serine  
   L-arginine  
   L-ornithine  
  1. * result from [15]. Numbers provide the count of inconsistencies pertaining to each category.