Skip to main content

Table 1 Summary of the ReTrace [21] analysis of the amino acid biosynthetic routes in T. reesei.

From: 13C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose

Amino acid Precursors Paths Zo AvgSc BestSize AvgSize MinPoor
Ala Pyr 227 1 652 1 16.8 0
Arg Oga 134 1 811 9 15.1 0
Asp Oaa 121 1 757 1 13.5 0
Glu Oga 36 1 426 1 12.6 0
Gly Ser 260 1 1128 1 16.1 0
Gly Thr 71 1 522 2 12.6 0
His R5P 21 1 774 22 25.8 0
Ile OAA, Pyr 483 1 797 14 18.7 0
Leu AcCoA, Pyr 916 1 356 13 19.1 1
Lys AcCoA, Oga 347 0.67 834 11 14.6 0
Phe E4P, PEP 348 1 679 12 19.2 0
Pro Oga 119 1 673 3 14.4 0
Ser 3PG 69 1 670 3 15.3 0
Thr Oaa 97 1 768 7 2.5 0
Tyr E4P, PEP 156 1 654 19 19.6 0
  1. Paths paths found, Zo highest fraction of transferred atoms, AvgSc average reaction scores, BestSize the size of the pathway achieving Zo reported, AvgSize average pathway size, MinPoor minimum number of reactions with a score under 50