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Table 1 Elementary mode analysis output summary for comparison of daylight modeling approaches.

From: In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study

 

compartment

pooled

nested

# of modes

74507

38216

428

YX/hva

0.117

0.128

0.116

YATP/hvb

1

1

1

YXsyn/hvc

0.117

n/a

0.116

YXFAP/hv

0.078

n/a

0.075

YXSRB/hv

0.016

n/a

0.015

YATPsyn/hv

1

n/a

1

YATPFAP/hv

0.5

n/a

0.506

YATPSRB/hv

0.033

n/a

0.031

YPG/hv

0.122

0.125

0.121

YPHB/hvd

0.089

0.111

0.090

  1. n/a = not applicable.
  2. a 'Yi/j' is the yield of i on j (i.e. production of i divided by consumption of j). 'X' represents Cmoles of biomass and 'hv' denotes moles of photosynthetically-available photons.
  3. b 'ATP' represents moles of ATP available for cellular maintenance.
  4. c 'syn' designates a parameter associated with the Synechococcus guild. 'FAP' indicates a parameter associated with the filamentous anoxygenic phototroph guild and 'SRB' denotes a parameter associated with sulfate-reducing bacteria guild.
  5. d 'PHB' represents Cmoles of polyhydroxybutyrate (a carbon/electron storage compound associated with the filamentous anoxygenic phototrophs).
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BMC Systems Biology

ISSN: 1752-0509

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