Table 2 List of bacterial reactions and metabolites.
From: Metabolic investigation of host/pathogen interaction using MS2-infected Escherichia coli
Name | Description |
|---|---|
Reactions | Â |
Pentose Phosphate Pathway (Figure 2) | Â |
G6PDH2r | g6p + nadp → 6pgl + h + nadph |
PGL | 6pgl + h2o → 6pgc + h |
GND | 6pgc + nadp → co2 + nadph + ru5p-D |
RPE | ru5p-D → xu5p-D |
RPI | ru5p-D → r5p |
TKT1 | r5p + xu5p-D → g3p + s7p |
TKT2 | e4p + xu5p-D → f6p + g3p |
TALA | g3p + s7p → e4p + f6p |
Glycolytic Pathway (Figure 3) | Â |
GLCptspp | glc-D + pep → g6p + pyr |
HEX1 | glc-D + atp → g6p + adp + h |
PGI | g6p → f6p |
PFK | atp + f6p → adp + fdp + h |
FBA | fdp → dhap + g3p |
GAPD | g3p + nad + pi → 13dpg + h + nadh |
PGK | 13dpg + adp → 3pg + atp |
PGM | 3pg → 2pg |
ENO | 2pg → h2o + pep |
TCA Cycle (Figure 4) | Â |
CS | accoa + h2o + oaa → cit + coa + h |
ACONTa | cit → acon-C + h2o |
ACONTb | acon-C + h2o → icit |
ICDHyr | icit + nadp → akg + co2 + nadph |
AKGDH | akg + coa + nad → co2 + nadh + succoa |
SUCOAS | adp + pi + succoa → atp + coa + succ |
SUCDi | q8 + succ → fum + q8h2 |
FUM | fum + h2o → mal-L |
MDH | mal-L + nad → h + nadh + oaa |
Metabolites | Â |
13dpg | 3-Phospho-D-glyceroyl phosphate |
2pg | D-Glycerate 2-phosphate |
3pg | 3-Phospho-D-glycerate |
6pgc | 6-Phospho-D-gluconate |
6pgl | 6-phospho-D-glucono-1,5-lactone |
Accoa | Acetyl-CoA |
acon-C | cis-Aconitate |
Adp | Adenosine diphosphate |
Akg | 2-Oxoglutarate |
Atp | Adenosine triphosphate |
Cit | Citrate |
co2 | Carbon dioxide |
Coa | Coenzyme A |
Dhap | Dihydroxyacetone phosphate |
e4p | D-Erythrose 4-phosphate |
f6p | D-Fructose 6-phosphate |
Fad | Flavin adenine dinucleotide |
fadh2 | Flavin adenine dinucleotide - reduced |
Fdp | D-Fructose 1,6-bisphosphate |
Fum | Fumarate |
g3p | Glyceraldehyde 3-phosphate |
g6p | D-Glucose 6-phosphate |
glc-D | D-Glucose |
H | H+ |
h2o | Water |
Icit | Isocitrate |
mal-L | L-Malate |
Nad | Nicotinamide adenine dinucleotide |
Nadh | Nicotinamide adenine dinucleotide - reduced |
Nadp | Nicotinamide adenine dinucleotide phosphate |
Nadph | Nicotinamide adenine dinucleotide phosphate - reduced |
Oaa | Oxaloacetate |
Pep | Phosphoenolpyruvate |
Pi | Phosphate |
Pyr | Pyruvate |
q8 | Ubiquinone-8 |
q8h2 | Ubiquinol-8 |
r5p | alpha-D-Ribose 5-phosphate |
ru5p-D | D-Ribulose 5-phosphate |
s7p | Sedoheptulose 7-phosphate |
Succ | Succinate |
Succoa | Succinyl-CoA |
xu5p-D | D-Xylulose 5-phosphate |