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Table 2 List of bacterial reactions and metabolites.

From: Metabolic investigation of host/pathogen interaction using MS2-infected Escherichia coli

Name Description
Reactions  
Pentose Phosphate Pathway (Figure 2)  
G6PDH2r g6p + nadp → 6pgl + h + nadph
PGL 6pgl + h2o → 6pgc + h
GND 6pgc + nadp → co2 + nadph + ru5p-D
RPE ru5p-D → xu5p-D
RPI ru5p-D → r5p
TKT1 r5p + xu5p-D → g3p + s7p
TKT2 e4p + xu5p-D → f6p + g3p
TALA g3p + s7p → e4p + f6p
Glycolytic Pathway (Figure 3)  
GLCptspp glc-D + pep → g6p + pyr
HEX1 glc-D + atp → g6p + adp + h
PGI g6p → f6p
PFK atp + f6p → adp + fdp + h
FBA fdp → dhap + g3p
GAPD g3p + nad + pi → 13dpg + h + nadh
PGK 13dpg + adp → 3pg + atp
PGM 3pg → 2pg
ENO 2pg → h2o + pep
TCA Cycle (Figure 4)  
CS accoa + h2o + oaa → cit + coa + h
ACONTa cit → acon-C + h2o
ACONTb acon-C + h2o → icit
ICDHyr icit + nadp → akg + co2 + nadph
AKGDH akg + coa + nad → co2 + nadh + succoa
SUCOAS adp + pi + succoa → atp + coa + succ
SUCDi q8 + succ → fum + q8h2
FUM fum + h2o → mal-L
MDH mal-L + nad → h + nadh + oaa
Metabolites  
13dpg 3-Phospho-D-glyceroyl phosphate
2pg D-Glycerate 2-phosphate
3pg 3-Phospho-D-glycerate
6pgc 6-Phospho-D-gluconate
6pgl 6-phospho-D-glucono-1,5-lactone
Accoa Acetyl-CoA
acon-C cis-Aconitate
Adp Adenosine diphosphate
Akg 2-Oxoglutarate
Atp Adenosine triphosphate
Cit Citrate
co2 Carbon dioxide
Coa Coenzyme A
Dhap Dihydroxyacetone phosphate
e4p D-Erythrose 4-phosphate
f6p D-Fructose 6-phosphate
Fad Flavin adenine dinucleotide
fadh2 Flavin adenine dinucleotide - reduced
Fdp D-Fructose 1,6-bisphosphate
Fum Fumarate
g3p Glyceraldehyde 3-phosphate
g6p D-Glucose 6-phosphate
glc-D D-Glucose
H H+
h2o Water
Icit Isocitrate
mal-L L-Malate
Nad Nicotinamide adenine dinucleotide
Nadh Nicotinamide adenine dinucleotide - reduced
Nadp Nicotinamide adenine dinucleotide phosphate
Nadph Nicotinamide adenine dinucleotide phosphate - reduced
Oaa Oxaloacetate
Pep Phosphoenolpyruvate
Pi Phosphate
Pyr Pyruvate
q8 Ubiquinone-8
q8h2 Ubiquinol-8
r5p alpha-D-Ribose 5-phosphate
ru5p-D D-Ribulose 5-phosphate
s7p Sedoheptulose 7-phosphate
Succ Succinate
Succoa Succinyl-CoA
xu5p-D D-Xylulose 5-phosphate