Table 1 Statistics for the 16 clusters for Fig. 1
From: mRNA stability and the unfolding of gene expression in the long-period yeast metabolic cycle
cl. | genes | HL | phase | width | ontology | |||
|---|---|---|---|---|---|---|---|---|
| Â | Â | mean | std | mean | std | mean | std | Â |
1 | 101 | 13.26 | (9.54) | 32.4 | (9.4) | 2.2 | (0.56) | RNA, rRNA, and tRNA processing and metabolism, ribosome biogenesis and assembly |
2 | 58 | 16.02 | (19.07) | 26.3 | (7.6) | 2.3 | (0.66) | RNA, rRNA and tRNA processing and metabolism, RNA helicase, ribosome assembly |
3 | 101 | 16.46 | (8.65) | 43.3 | (15.4) | 2.1 | (0.65) | RNA polymerase, translation initiation, regulation, and termination, nucleotide biosynthesis |
4 | 34 | 19.44 | (10.19) | 98.2 | (9.7) | 6.3 | (3.54) | transferase activity, DNA replication, cell cycle |
5 | 102 | 22.99 | (10.27) | 67.7 | (11.8) | 3.3 | (1.95) | glycine metabolism, nitrogen and sulfur metabolism, amino acid biosynthesis |
6 | 102 | 24.59 | (11.67) | 177.4 | (51.0) | 5.2 | (3.43) | retrotransposons, long term repeats |
7 | 124 | 24.59 | (13.45) | 109.6 | (15.8) | 5.0 | (2.88) | mitochondrial membrane organization and biogenesis, mitochondrial transport |
8 | 151 | 24.72 | (11.80) | 128.3 | (9.4) | 7.6 | (2.96) | mitochondrial ribosome, envelope, and membranes |
9 | 232 | 25.76 | (13.78) | 44.8 | (22.5) | 2.6 | (1.46) | cytoplasmic ribosomes, translation processes |
10 | 154 | 28.34 | (16.36) | 169.7 | (20.3) | 6.0 | (3.59) | ion/cation transmembrane transport, electron transport, oxidative phosphorylation |
11 | 230 | 31.99 | (19.05) | 246.7 | (35.5) | 5.4 | (3.90) | endopeptidase activity, protein catabolic process, proteasome, actin filament organization, glycolysis, gluconeogenesis |
12 | 65 | 32.69 | (18.68) | 214.8 | (14.8) | 5.5 | (2.28) | lipid and alcohol metabolic process, peroxisome |
13 | 223 | 38.24 | (28.35) | 245.8 | (12.6) | 9.2 | (3.71) | kinase activity, vacuolar transport, membrane organization and biogenesis |
14 | 128 | 39.10 | (29.27) | 285.5 | (16.1) | 10.1 | (4.19) | arginine biosynthesis, protein folding |
15 | 117 | 42.83 | (28.02) | 258.7 | (11.5) | 10.2 | (4.59) | hydrolase activity, fatty acid oxidation, cytokinesis |
16 | 29 | 45.74 | (26.30) | 307.8 | (15.1) | 8.7 | (2.84) | catalytic activity |