Table 1 Patch applications in pathway modelling
Patch feature | Example application |
|---|---|
Addition patch | Adding a substrate or reaction |
Deletion patch | Removing a substrate or reaction |
Replacement patch | Changing a reaction rate |
Addition patch file | Adding a new pathway of reactions and substrates |
Remove patch files | A knockout of a substrate and its associated reactions |
Replacement patch files | Changing a set of reaction rates |
Dependent patches | A knockout applied to a particular pathway |