TY - BOOK PY - 2008 DA - 2008// TI - Analysis of Microarray Data: A Network Based Approach PB - Wiley VCH CY - USA ID - ref1 ER - TY - BOOK AU - Alon, U. PY - 2006 DA - 2006// TI - An Introduction to Systems Biology: Design Principles of Biological Circuits PB - Hall/CRC CY - USA ID - Alon2006 ER - TY - BOOK AU - Kitano, H. PY - 2001 DA - 2001// TI - Foundations of Systems Biology PB - MIT Press CY - USA ID - Kitano2001 ER - TY - BOOK AU - Palsson, B. O. PY - 2006 DA - 2006// TI - Systems Biology PB - Cambridge University Press CY - USA UR - https://doi.org/10.1017/CBO9780511790515 DO - 10.1017/CBO9780511790515 ID - Palsson2006 ER - TY - BOOK AU - von Bertalanffy, L. PY - 1968 DA - 1968// TI - General System Theory: Foundation, Development, Application PB - New York CY - George Braziller ID - von Bertalanffy1968 ER - TY - JOUR AU - Watts, D. AU - Strogatz, S. PY - 1998 DA - 1998// TI - Collective dynamics of 'small-world' networks JO - Nature VL - 393 UR - https://doi.org/10.1038/30918 DO - 10.1038/30918 ID - Watts1998 ER - TY - BOOK AU - Watts, D. PY - 1999 DA - 1999// TI - Small Worlds: The Dynamics of Networks between Order and Randomness PB - Princeton University Press CY - USA ID - Watts1999 ER - TY - JOUR AU - Albert, R. AU - Jeong, H. AU - Barabasi, A. L. PY - 1999 DA - 1999// TI - Diameter of the world wide web JO - Nature VL - 401 UR - https://doi.org/10.1038/43601 DO - 10.1038/43601 ID - Albert1999 ER - TY - JOUR AU - Jeong, H. AU - Tombor, B. AU - Albert, R. AU - Oltvai, Z. N. AU - Barabasi, A. L. PY - 2000 DA - 2000// TI - The large-scale organization of metabolic networks JO - Nature VL - 407 UR - https://doi.org/10.1038/35036627 DO - 10.1038/35036627 ID - Jeong2000 ER - TY - JOUR AU - Albert, R. AU - Barabasi, A. PY - 2002 DA - 2002// TI - Statistical Mechanics of Complex Networks JO - Rev of Modern Physics VL - 74 UR - https://doi.org/10.1103/RevModPhys.74.47 DO - 10.1103/RevModPhys.74.47 ID - Albert2002 ER - TY - JOUR AU - Newman, M. E. J. PY - 2003 DA - 2003// TI - The Structure and Function of Complex Networks JO - SIAM Review VL - 45 UR - https://doi.org/10.1137/S003614450342480 DO - 10.1137/S003614450342480 ID - Newman2003 ER - TY - JOUR AU - Ravasz, E. AU - Somera, A. L. AU - Mongru, D. A. AU - Oltvai, Z. N. AU - Barabasi, A. L. PY - 2002 DA - 2002// TI - Hierarchical Organization of Modularity in Metabolic Networks JO - Science VL - 297 UR - https://doi.org/10.1126/science.1073374 DO - 10.1126/science.1073374 ID - Ravasz2002 ER - TY - JOUR AU - Schwikowski, B. AU - Uetz, P. AU - Fields, S. PY - 2000 DA - 2000// TI - A network of protein-protein interactions in yeast JO - Nat Biotechnol VL - 18 UR - https://doi.org/10.1038/82360 DO - 10.1038/82360 ID - Schwikowski2000 ER - TY - JOUR AU - Soinov, L. A. AU - Krestyaninova, M. A. AU - Brazma, A. PY - 2003 DA - 2003// TI - Towards reconstruction of gene networks from expression data by supervised learning JO - Genome Biology VL - 4 UR - https://doi.org/10.1186/gb-2003-4-1-r6 DO - 10.1186/gb-2003-4-1-r6 ID - Soinov2003 ER - TY - BOOK PY - 2003 DA - 2003// TI - Handbook of Graphs and Networks: From the Genome to the Internet ID - ref15 ER - TY - JOUR AU - van Noort, V. AU - Snel, B. AU - Huymen, M. A. PY - 2004 DA - 2004// TI - The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model JO - EMBO reports VL - 5 UR - https://doi.org/10.1038/sj.embor.7400090 DO - 10.1038/sj.embor.7400090 ID - van Noort2004 ER - TY - JOUR AU - Friedman, N. PY - 2004 DA - 2004// TI - Inferring cellular networks using probabilistic graphical models JO - Science VL - 303 UR - https://doi.org/10.1126/science.1094068 DO - 10.1126/science.1094068 ID - Friedman2004 ER - TY - JOUR AU - Margolin, A. AU - Nemenman, I. AU - Basso, K. AU - Wiggins, C. AU - Stolovitzky, G. AU - Dalla Favera, R. AU - Califano, A. PY - 2006 DA - 2006// TI - ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-S1-S7 DO - 10.1186/1471-2105-7-S1-S7 ID - Margolin2006 ER - TY - JOUR AU - Werhli, A. AU - Grzegorczyk, M. AU - Husmeier, D. PY - 2006 DA - 2006// TI - Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl391 DO - 10.1093/bioinformatics/btl391 ID - Werhli2006 ER - TY - JOUR AU - Barabasi, A. L. AU - Oltvai, Z. N. PY - 2004 DA - 2004// TI - Network Biology: Understanding the Cell's Functional Organization JO - Nature Reviews VL - 5 UR - https://doi.org/10.1038/nrg1272 DO - 10.1038/nrg1272 ID - Barabasi2004 ER - TY - JOUR AU - Kitano, H. PY - 2004 DA - 2004// TI - Biological robustness JO - Nat Rev Genet VL - 5 UR - https://doi.org/10.1038/nrg1471 DO - 10.1038/nrg1471 ID - Kitano2004 ER - TY - JOUR AU - Stelling, J. AU - Sauer, U. AU - Szallasi, Z. AU - Doyle, F. AU - Doyle, J. PY - 2004 DA - 2004// TI - Robustness of Cellular Functions JO - Cell VL - 118 UR - https://doi.org/10.1016/j.cell.2004.09.008 DO - 10.1016/j.cell.2004.09.008 ID - Stelling2004 ER - TY - JOUR AU - Kitano, H. PY - 2007 DA - 2007// TI - Towards a theory of biological robustness JO - Mol Syst Biol VL - 3 UR - https://doi.org/10.1038/msb4100179 DO - 10.1038/msb4100179 ID - Kitano2007 ER - TY - JOUR AU - Albert, R. AU - Jeong, H. AU - Barabasi, A. L. PY - 2000 DA - 2000// TI - Error and attack tolerance of complex networks JO - Nature VL - 406 UR - https://doi.org/10.1038/35019019 DO - 10.1038/35019019 ID - Albert2000 ER - TY - JOUR AU - Li, F. AU - Long, T. AU - Lu, Y. AU - Ouyang, Q. AU - Tang, C. PY - 2004 DA - 2004// TI - The yeast cell-cycle network is robustly designed JO - Proc Natl Acad Sci USA VL - 101 UR - https://doi.org/10.1073/pnas.0305937101 DO - 10.1073/pnas.0305937101 ID - Li2004 ER - TY - JOUR AU - Ingolia, N. PY - 2004 DA - 2004// TI - Topology and robustness in the Drosophila segment polarity network JO - PLoS Biol VL - 2 UR - https://doi.org/10.1371/journal.pbio.0020123 DO - 10.1371/journal.pbio.0020123 ID - Ingolia2004 ER - TY - JOUR AU - Klemm, K. AU - Bornholdt, S. PY - 2005 DA - 2005// TI - Topology of biological networks and reliability of information processing JO - PNAS VL - 102 UR - https://doi.org/10.1073/pnas.0509132102 DO - 10.1073/pnas.0509132102 ID - Klemm2005 ER - TY - JOUR AU - Wilhelm, T. AU - Behre, J. AU - Schuster, S. PY - 2004 DA - 2004// TI - Analysis of structural robustness of metabolic networks JO - Syst Biol VL - 1 UR - https://doi.org/10.1049/sb:20045004 DO - 10.1049/sb:20045004 ID - Wilhelm2004 ER - TY - JOUR AU - Kauffman, S. PY - 1969 DA - 1969// TI - Metabolic stability and epigenesis in randomly constructed genetic nets JO - Journal of Theoretical Biology VL - 22 UR - https://doi.org/10.1016/0022-5193(69)90015-0 DO - 10.1016/0022-5193(69)90015-0 ID - Kauffman1969 ER - TY - BOOK AU - Kauffman, S. PY - 1993 DA - 1993// TI - Origins of Order: Self-Organization and Selection in Evolution PB - Oxford University Press CY - UK ID - Kauffman1993 ER - TY - JOUR AU - McAdams, H. H. AU - Arkin, A. PY - 1997 DA - 1997// TI - Stochastic Mechanisms in Gene Expression JO - Proc Natl Acad Sci USA VL - 94 UR - https://doi.org/10.1073/pnas.94.3.814 DO - 10.1073/pnas.94.3.814 ID - McAdams1997 ER - TY - JOUR AU - Tu, Y. AU - Stolovitzky, G. AU - Klein, U. PY - 2002 DA - 2002// TI - Quantitative noise analysis for gene expression microarray experiments JO - Proc Natl Acad Sci USA VL - 99 UR - https://doi.org/10.1073/pnas.222164199 DO - 10.1073/pnas.222164199 ID - Tu2002 ER - TY - JOUR AU - Wagner, A. PY - 2000 DA - 2000// TI - Robustness against mutations in genetic networks of yeast JO - Nature Genetics VL - 24 UR - https://doi.org/10.1038/74174 DO - 10.1038/74174 ID - Wagner2000 ER - TY - JOUR AU - Wagner, A. PY - 2005 DA - 2005// TI - Robustness, Neutrality, and Evolvability JO - FEBS Letters VL - 579 UR - https://doi.org/10.1016/j.febslet.2005.01.063 DO - 10.1016/j.febslet.2005.01.063 ID - Wagner2005 ER - TY - BOOK AU - Wagner, A. PY - 2007 DA - 2007// TI - Robustness and Evolvability in Living Systems PB - Princeton University Press CY - USA ID - Wagner2007 ER - TY - JOUR AU - Emmert-Streib, F. AU - Dehmer, M. PY - 2009 DA - 2009// TI - Fault Tolerance of Information Processing in Gene Networks JO - Physica A VL - 388 UR - https://doi.org/10.1016/j.physa.2008.10.032 DO - 10.1016/j.physa.2008.10.032 ID - Emmert-Streib2009 ER - TY - BOOK AU - Norris, J. PY - 1998 DA - 1998// TI - Markov Chains PB - Cambridge University Press CY - USA ID - Norris1998 ER - TY - BOOK AU - Gallager, R. PY - 1968 DA - 1968// TI - Information Theory and Reliable Communication PB - Wiley CY - New York ID - Gallager1968 ER - TY - BOOK AU - MacKay, D. PY - 2003 DA - 2003// TI - Information theory, inference and learning algorithms PB - Cambridge University Press CY - USA ID - MacKay2003 ER - TY - BOOK AU - Shannon, C. AU - Weaver, W. PY - 1949 DA - 1949// TI - The Mathematical Theory of Communication PB - University of Illinois Press CY - USA ID - Shannon1949 ER - TY - JOUR AU - Dehmer, M. AU - Emmert-Streib, F. PY - 2008 DA - 2008// TI - The Structural Information Content of Chemical Networks JO - Zeitschrift für Naturforschung A VL - 63a ID - Dehmer2008 ER - TY - JOUR AU - Dehmer, M. AU - Borgert, S. AU - Emmert-Streib, F. PY - 2008 DA - 2008// TI - Entropy Bounds for Hierarchical Molecular Networks JO - PLoS ONE VL - 3 UR - https://doi.org/10.1371/journal.pone.0003079 DO - 10.1371/journal.pone.0003079 ID - Dehmer2008 ER - TY - JOUR AU - Luscombe, N. AU - Badu, M. AU - Yu, H. AU - Snyder, M. AU - Teichmann, S. AU - Gerstein, M. PY - 2004 DA - 2004// TI - Genomic analysis of regulatory network dynamics reveals large topological changes JO - Nature VL - 431 UR - https://doi.org/10.1038/nature02782 DO - 10.1038/nature02782 ID - Luscombe2004 ER - TY - JOUR AU - Yu, H. AU - Kim, P. AU - Sprecher, E. AU - Trifonov, V. AU - Gerstein, M. PY - 2007 DA - 2007// TI - The importance of bottlenecks in protein networks: Correlation with gene essentiality and expression dynamics JO - PLoS Computational Biology VL - 3 UR - https://doi.org/10.1371/journal.pcbi.0030059 DO - 10.1371/journal.pcbi.0030059 ID - Yu2007 ER - TY - JOUR AU - Giaever, G. PY - 2002 DA - 2002// TI - Functional profiling of the Saccharomyces cerevisiae genome JO - Nature VL - 418 UR - https://doi.org/10.1038/nature00935 DO - 10.1038/nature00935 ID - Giaever2002 ER - TY - JOUR AU - Kullback, S. AU - Leibler, R. PY - 1951 DA - 1951// TI - On information and sufficiency JO - Ann Math Stat VL - 22 UR - https://doi.org/10.1214/aoms/1177729694 DO - 10.1214/aoms/1177729694 ID - Kullback1951 ER - TY - BOOK AU - Kullback, S. PY - 1959 DA - 1959// TI - Information theory and statistics PB - Wiley CY - New York ID - Kullback1959 ER - TY - BOOK AU - Sheskin, D. J. PY - 2004 DA - 2004// TI - Handbook of Parametric and Nonparametric Statistical Procedures PB - RC Press, Boca Raton CY - FL ID - Sheskin2004 ER - TY - JOUR AU - Dijkstra, E. PY - 1959 DA - 1959// TI - A note on two problems in connection with graphs JO - Numerische Math VL - 1 UR - https://doi.org/10.1007/BF01386390 DO - 10.1007/BF01386390 ID - Dijkstra1959 ER - TY - JOUR AU - Deutscher, D. AU - Meilijson, I. AU - Schuster, S. AU - Ruppin, E. PY - 2008 DA - 2008// TI - Can single knockouts accurately single out gene functions JO - BMC Systems Biology VL - 2 UR - https://doi.org/10.1186/1752-0509-2-50 DO - 10.1186/1752-0509-2-50 ID - Deutscher2008 ER - TY - JOUR AU - Orphanides, G. PY - 1999 DA - 1999// TI - The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins JO - Nature VL - 400 UR - https://doi.org/10.1038/22350 DO - 10.1038/22350 ID - Orphanides1999 ER - TY - BOOK PY - 2008 DA - 2008// TI - Information Theory and Statistical Learning PB - Springer CY - New York ID - ref52 ER -