Table 4 Summary of output files/directories created for each ChemChains experiment.
File/Directory Name | Description |
|---|---|
allNodes_avg.mtb | Tab-delimited text file with activation levels of all nodes across all simulations |
input_dosages.csv | Activity levels of all external inputs across all simulations |
patternNodes_avg.csv | Activity levels of nodes specified for pattern analysis. (Created only during pattern analysis) |
input_labels.csv | List of external input nodes |
node_labels.csv | Names of all nodes in the network |
specs.txt | Simulation specification file used for this experiment |
logic/ | Directory containing all logic files associated with this experiment |
nodesAvg/ | Directory containing activity level information for each node |
snapshotAnalysis/ | Directory to hold node activity information obtained from multiple points in the course of a simulation |
patterns/ | Output directory for the patterns extension |
bits/ | Output directory holding ON/OFF sequences for all nodes in the network |