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Table 1 Parent GO terms selected for the analysis, and number of elements included.

From: Interactome and Gene Ontology provide congruent yet subtly different views of a eukaryotic cell

GO term Level1 Genes2 ORFs3 Prot.
DIP4
Prot.DIP/
ORFs (%)
Prot.
GOLD5
Prot.GOLD/
ORFs (%)
Developmental process (BP) 1 768 757 632 83.5% 257 34.0%
Reproduction (BP) 1 299 298 245 82.2% 111 37.3%
Establishment of cellular localization (BP) 1 573 568 452 79.6% 188 33.1%
Response to stimulus (BP) 1 670 657 514 78.2% 207 31.5%
Ribonucleoprotein complex (CC) 2 556 459 318 69.3% 96 20.9%
Organelle envelope (CC) 2 346 345 230 66.7% 69 20.0%
Transcription regulator activity (MF) 1 307 303 276 91.1% 107 35.3%
Structural molecule activity (MF) 1 307 286 231 80.8% 75 26.2%
Transporter activity (MF) 1 380 377 297 78.8% 63 16.7%
      Average:
78.9%
  Average:
28.3%
  1. BP: Biological Process; CC: Cellular Component; MF: Molecular Function. 1: Levels of the parent GO terms. Level 1 terms are hierarchically located just below the three main categories (BP, CC and MF) while Level 2 terms are below a Level 1 term. 2: Number of genes selected for the analysis, i. e. those ascribed to the parent GO term which are also included in one of the selected child GO terms. 3: Genes among those in the previous column that contain ORFs and therefore encode for proteins. 4: Number of products among those in the selected ORFs for which interactions were compiled in the DIP database. 5: Same as 4, but for the GOLD dataset.