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Table 5 Oxygen fugacities, root mean square deviations and correlation coefficients in comparisons of intracompartmental protein interactionsa.

From: Calculation of the relative metastabilities of proteins in subcellular compartments of Saccharomyces cerevisiae

Most abundant proteins Model complexes
Location n log RMSD ρ Complex n log RMSD ρ
actin 22 -75.5 0.61 0.19 1 5 -77.0 0.49 -0.10
ambiguous 50 -73.5 0.90 0.42 2 7 -76.5 0.52 0.50
bud 50 -72.5 1.17 -0.02 3 5 -73.5 0.53 -0.30
bud neck 11 -75.5 0.73 0.02 4 6 -78.5 0.56 0.66
cell periphery 38 -74.5 0.63 0.42 5 4 -74.5 0.45 0.20
cytoplasm 50 -78.0 1.09 0.19 6 7 -78.5 0.64 -0.82
early Golgi 9 -74.0 0.72 0.45 7 4 -76.0 0.66 -0.80
endosome 30 -75.5 0.86 0.28 8 4 -76.5 0.76 -0.80
ER 49 -76.0 0.97 0.03 9 3 -77.0 0.07 1.00
ER to Golgi 5 -78.0 0.40 0.40 10 4 -76.0 0.45 1.00
Golgi 14 -76.0 0.88 -0.54 11 10 -74.5 0.62 -0.04
late Golgi 29 -76.0 0.73 0.17 12 5 -75.0 1.15 0.60
lipid particle 17 -78.0 0.92 0.22 13 12 -76.0 0.93 -0.19
microtubule 10 -75.0 0.61 0.36 14 7 -74.5 1.04 -0.75
mitochondrion 50 -75.0 0.53 0.46 15 17 -77.5 0.44 0.30
nuclear periphery 46 -76.0 0.62 0.32 16 23 -76.0 0.43 0.52
nucleolus 50 -74.0 0.72 0.18 17 6 -77.5 0.26 1.00
nucleus 50 -75.0 0.80 -0.02 18 5 -78.5 0.24 0.90
peroxisome 18 -75.5 0.55 0.56 19 8 -75.5 0.65 0.57
punctate composite 49 -74.0 0.78 0.19 20 15 -74.0 0.68 0.64
spindle pole 30 -75.5 1.02 0.12 21 5 -72.0 0.78 0.80
vacuolar membrane 45 -74.0 0.92 0.48 22 15 -74.0 0.94 0.50
vacuole 50 -74.5 1.42 0.23 23 9 -75.0 0.71 0.52
  1. a. Values of log in each location were obtained by comparing calculated and experimental logarithms of activities of the most abundant proteins in different subcellular compartments and of model complexes for each location (Additional File 6). n denotes the number of model proteins used in the calculations. RMSD values were calculated using Eqn. (7), and ρ denotes the Spearman rank correlation coefficient, calculated using Eqn. (8).