Table 6 Example for the observed transition context K obs . The rows represent the transitions from state n to the state (n+1) of sample OA1 following TNFα stimulation.
From: Adapted Boolean network models for extracellular matrix formation
Attribute → |  |  |  |  |  |  |  |  |  |  |  |  |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | FOS.in | JUN.in | JUNB.in | JUND.in | MMP3.in | ... | FOS.out | JUN.out | JUNB.out | JUND.out | MMP3.out | ... |
Transition ↓ |  |  |  |  |  |  |  |  |  |  |  |  |
( s 0 in , s 1 out ) | on | off | off | on | off | ... | on | on | on | on | on | ... |
( s 0 in , s 2 out ) | on | off | off | on | off | ... | off | on | on | on | on | ... |
( s 0 in , s 4 out ) | on | off | off | on | off | ... | off | off | off | on | on | ... |
( s 0 in , s 12 out ) | on | off | off | on | off | ... | on | off | off | on | on | ... |
( s 1 in , s 2 out ) | on | on | on | on | on | ... | off | on | on | on | on | ... |
... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... |