Table 4 Predicted genes for Cluster A and B form the "no evidence" group
From: A dynamic network of transcription in LPS-treated human subjects
| Cluster | Category | Gene Symbol | Gene Name |
|---|---|---|---|
| A | Top 10 | ETS2 | v-ets erythroblastosis virus E26 oncogene homolog 2 |
| MTF1 | metal-regulatory transcription factor 1 | ||
| SAMSN1 | SAM domain, SH3 domain and nuclear localization signals 1 | ||
| IVNS1ABP | influenza virus NS1A binding protein | ||
| IFNGR2 | interferon gamma receptor 2 | ||
| PLAUR | plasminogen activator, urokinase receptor | ||
| IL1R2 | interleukin 1 receptor, type II | ||
| AZIN1 | antizyme inhibitor 1 | ||
| EHD1 | EH-domain containing 1 | ||
| PCNX | pecanex homolog | ||
| Related to innate immunity | IFNGR2 | interferon gamma receptor 2 | |
| IL1R2 | interleukin 1 receptor, type II | ||
| MAP4K4 | mitogen-activated protein kinase kinase kinase kinase 4 | ||
| NCF1 | neutrophil cytosolic factor 1 | ||
| TXN | thioredoxin | ||
| RIPK2 | receptor-interacting serine-threonine kinase 2 | ||
| Supported by other evidence | IFNGR2* | interferon gamma receptor 2 | |
| GPR84** | G protein-coupled receptor 84 | ||
| FCAR** | Fc fragment of IgA, receptor for | ||
| GADD45B** | growth arrest and DNA-damage-inducible, beta | ||
| B | Top 10 | TRIM5 | tripartite motif-containing 5 |
| GK | glycerol kinase | ||
| SP110 | SP110 nuclear body protein | ||
| TMEM140 | transmembrane protein 140 | ||
| CHMP5 | chromatin modifying protein 5 | ||
| RHBDF2 | rhomboid 5 homolog 2 | ||
| SAMD9 | sterile alpha motif domain containing 9 | ||
| DDX58 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 | ||
| TLE3 | transducin-like enhancer of split 3 | ||
| TRIM21 | tripartite motif-containing 21 | ||
| Related to innate immunity | CSF2RB | colony stimulating factor 2 receptor, beta, low-affinity | |
| HCK | hemopoietic cell kinase | ||
| IL13RA1 | interleukin 13 receptor, alpha 1 | ||
| TLR1 | toll-like receptor 1 | ||
| TNFRSF1A | tumor necrosis factor receptor superfamily, member 1A | ||
| Supported by other evidence | DDX5*** | DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 | |
| HERC5*** | hect domain and RLD 5 | ||
| IFIT2*** | interferon-induced protein with tetratricopeptide repeats 2 | ||
| OASL*** | 2'-5'-oligoadenylate synthetase-like | ||
| SNX10*** | sorting nexin 10 | ||
| ACSL4*** | acyl-CoA synthetase long-chain family member 4 |
