Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network

Atias, Osnat; Chor, Benny; Chamovitz, Daniel A

doi:10.1186/1752-0509-3-86

Table 1 List of experiments used in the global co-expression analysis

From: Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network

Accession Number	Number of Samples	Experimental Setup	Sampled Tissue	Lab
E-TABM-63	20	Mutant, Loss of Function	Various	Weigel, D
E-NASC-75	12	Mutant, Hormone Response	Seedling	Sakakibara, H
E-NASC-74	12	Mutant	Seedling	Coates, J
E-NASC-31	12	Mutant	Seedling	Hampton, C
E-NASC-29	12	Mutant, Nutrient Stress	Seedling	Greville, K
E-NASC-1	12	Mutant	Seedling	Cornah, J
E-MEXP-449	12	Loss of Function, Radiation Stress	Leaf	Van Breusegem, F
E-MEXP-444	12	Mutant, Radiation Stress	Seedling	Ruberti, I
E-MEXP-1094	12	Over Expression, Pathogen Stress	Leaf	Tang, Y
E-MEXP-547	14	Mutant, Pathogen Stress	Seedling	Felix, G
E-MEXP-300	15	Mutant	Various	Van Lijsebettens, M
E-MEXP-557	16	Mutant, Radiation Stress	Seedling	Ulm, R
E-GEOD-431	16	Mutant, Pathogen Stress	Unknown	Somerville, S
E-ATMX-3	16	Hormone Response, Over Expression	Unknown	Kim, J
E-TABM-21	18	Mutant, Light Conditions	Various	Weigel, D
E-NASC-76	18	Pathogen Stress	Seedling	Dewdney, J
E-NASC-61	18	Nutrient Stress	Various	Hammond, J
E-NASC-20	18	Mutant, Hormone Response	Whole Plant	De Grauwe, L
E-MEXP-265	18	Tissue Comparison	Various	Turner, SR
E-MEXP-550	20	Radiation Stress	Seedling	Ulm, R
E-MEXP-546	21	Mutant, Pathogen Stress	Leaf	Parker, JE
E-NASC-49	22	Light Conditions	Leaf	Smith, S
E-MEXP-475	23	Hormone Response, Nutrient Stress	Seedling	Bevan, MW
E-MEXP-791	24	Nutrient Stress	Various	Thibaud, MC
E-MEXP-739	24	Pathogen Stress	Leaf	Dudler, R
E-MEXP-509	24	Pathogen Stress	Leaf	Yang, C
E-NASC-77	27	Tissue Comparison	Root	Birnbaum, K
E-MEXP-728	28	Light Conditions, Temperature Conditions, Time Course	Shoot Apex	Weigel, D
E-MEXP-1138	28	Mutant	Pollen	Munster, T
E-MEXP-828	34	Nutrient Stress	Root	Coruzzi, GM
E-TABM-19	36	Mutant	Apex	Weigel, D
E-TABM-18	55	Ecotype Comparison	Seedling	Weigel, D
E-GEOD-911	12	Chemical Stress, Fusion Protein, Over Expression	Seedling	Wagner, D
E-GEOD-3454	12	Mutant, Hormone Response	Seedling	Zheng, ZL
E-GEOD-2848	12	Mutant, Time Course	Flower	Reed, JW
E-GEOD-991	14	Loss of Function, Gain of Function	Seedling	Bergmann, D
E-GEOD-3350	14	Mutant, Hormone Response	Root	Beeckman, T
E-GEOD-3326	16	Mutant, Temperature Conditions	Seedling	Zhu, JK
E-GEOD-3416	18	Light Conditions	Leaf	Stitt, M
E-GEOD-1110	22	Hormone Response	Seedling	Town, CD
E-GEOD-3220	24	Mutant, Pathogen Stress	Leaf	Somerville, S
E-GEOD-4733	27	Mutant, Hormone Response	Stamen	Browse, J
E-GEOD-3709	37	Temperature Conditions, Chemical Stress, Hormone Response	Cell culture	Whelan, J

(*) The accession number refers to the corresponding ArrayExpress repository ID.

Back to article page