Table 4 GO Enrichment of clusters found in the 0.3 co-expression network
From: Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network
Network tscore threshold | Cluster ID | Cluster Size | Enriched GO Terms | Percent of Genes with Enriched GO Terms |
|---|---|---|---|---|
0.3 | 1 | 126 | ribosome | 91.26% |
2 | 150 | chloroplast; photosynthesis; structural constituent of ribosome | 73.33%; 23.33%; 8.66% | |
3 | 143 | plastid; ribosome | 48.25%; 13.98% | |
4 | 34 | None | None | |
5 | 34 | nucleotide binding | 32.35% | |
6 | 39 | ribonucleoprotein complex; protein targeting to mitochondrion | 51.28%; 10.25% | |
7 | 14 | None | None | |
8 | 118 | plastid; organelle lumen | 48.3%; 9.32% | |
9 | 101 | plastid | 32.67% | |
10 | 68 | plastid | 45.58% | |
11 | 39 | glycoside biosynthesis | 10.25% | |
12 | 27 | None | None | |
13 | 83 | plastid; plastid organization and biogenesis | 63.85%; 6.02% | |
14 | 82 | plastid; mitocohndrion; response to stress; ER; response to temperature stimulus | 32.92%; 17.07%; 14.63%; 13.41%; 8.53% | |
15 | 9 | None | None | |
16 | 32 | None | None | |
17 | 78 | plastid; isoprenoid biosynthesis; carotenoid biosynthesis | 44.87%; 7.69%; 5.12% | |
18 | 8 | phenylpropanoid metabolic process; flavonoid biosynthesis; response to UV | 75%; 62.5%; 50% | |
19 | 7 | proteasome core complex | 100% | |
20 | 10 | None | None | |
21 | 9 | response to stress; defense response | 55.55%; 44.44% | |
22 | 30 | plastid | 66.66% | |
23 | 11 | None | None | |
24 | 8 | None | None | |
25 | 28 | plastid; cellular carbohydrate metabolism | 39.28%; 21.42% | |
26 | 9 | None | None | |
27 | 6 | DNA metabolic process; nucleosome assembly | 100%; 83.33% | |
28 | 6 | None | None | |
29 | 8 | None | None | |
30 | 7 | mitochondrion | 71.42% | |
31 | 6 | ATP Binding; response to heat | 66.66%; 66.66% | |
32 | 5 | None | None | |
33 | 15 | response to heat | 46.66% | |
34 | 6 | None | None | |
35 | 4 | None | None | |
36 | 4 | None | None | |
37 | 4 | None | None | |
38 | 4 | structural constituent of cell wall | 100% |