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Figure 3 | BMC Systems Biology

Figure 3

From: The genotype-phenotype relationship in multicellular pattern-generating models - the neglected role of pattern descriptors

Figure 3

Method overview: four stages in the investigation of the high-dimensional non-linear dynamic model: (1) Preliminary exploration. Design: trial-and-error. Analysis: visual inspection of model steady-state solutions, rendered as black and white images of Notch concentrations. (2) Large-scale systematic screening using extensive probing of the parameter space, monitored by computerised profiling by full factorial designs. Relating more than 50 computed image analysis descriptors to 7 known model parameters by regression in latent variables (jack-knifed PLSR). (3) Disciplined investigation using informative but more laborious human sensory descriptive profiling by a reduced factorial design, and relating 15 sensory image descriptors to all 7 model parameters by jack-knifed PLSR. (4) Pursuit of an unexpected discovery in a particular region of parameter space. Dense sampling of θD for chosen combination of other parameters, and relating estimated protein distributions and sensory image descriptors to θD by graphics.

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