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Table 2 Details about the 31 clusters of co-expressed genes.

From: Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle

Cluster # Size Mean phase (degrees) p-value for phase uniformity Significant motif Dominant Gene Ontology category
9 76 6 4.54E-01   transmembrane transporter activity
5 52 17 7.81E-08   cellular metabolic process, cellular component organization and biogenesis
14 42 42 6.41E-04 Mcb1 nucleotide binding, substrate-specific transporter activity
21 80 49 2.07E-17 G.TTGT [TG] [AG] oxidoreductase activity
29 9 53 6.84E-12 Histone CACCACC histones
15 41 55 1.49E-18 GTTGGC [AT]GT ion binding
10 12 95 3.54E-02   cellular metabolic process, protein binding, stress response
12 96 102 3.52E-04   transmembrane transporter activity
20 78 103 1.27E-07 CAAGTT transport, establishment of localization
18 34 108 1.89E-16   cellular metabolic process, nitrogen compound metabolic process
17 61 112 4.52E-12   cellular metabolic process, cofactor binding
16 49 135 1.57E-25 GTT.GCT nitrogen compound metabolic process
27 45 139 1.76E-02   transmembrane transporter activity
28 8 150 8.00E-07   
19 24 174 9.65E-15 GTGACTG [CT]T TAGGGTAGGG cellular metabolic process, structural constituent of ribosome
22 47 175 5.38E-02 CGTTAGTTTT regulation of metabolic process
23 118 175 1.03E-06   
26 83 188 1.90E-39 AGTTTG cellular component organization and biogenesis
11 43 194 9.52E-04 GTCGGTTTCC transmembrane transporter activity
24 103 195 3.52E-18   cellular metabolic process, ion binding
25 59 211 4.09E-02 [GT]TAAACA ribosome biogenesis and assembly
3 70 255 1.06E-07 TGTTTAC cell cycle, chromosome segregation
13 60 258 9.74E-05   cell cycle
1 155 259 2.21E-11 FKH cell cycle, stress response, cellular metabolic process, protein binding, response to endogenous stimulus
2 131 276 3.34E-13 FKH TCTTCT cell cycle
4 101 286 1.07E-06 FKH TGTAAGC cell cycle, cellular component organization and biogenesis
8 41 328 1.74E-02 ACCATTG FKH primary metabolic process, ion binding, regulation of biological quality
6 140 343 1.39E-03 T [GC]GTG [TG]T cellular component organization and biogenesis
31 49 344 1.47E-33 FKH cell division, cytokinetic process
30 22 357 6.56E-05 Dbl10 Ace2 cell cycle, regulation of metabolic process
7 71 359 6.15E-13 Ace2 cell cycle, cell communication
  1. Motifs similar to known motifs are given by the name published in the literature (ACCACA ~ Mcb1, CCCTTACCC ~ Histone, TTGTTTAC ~ FKH, CGTGTCGCGT ~ Dbl10, ACCAGCC ~ Ace2). Newly discovered motifs are given by their consensus sequence.