Skip to main content

Table 1:

From: Snazer: the simulations and networks analyzer

Xml-incapsulation routine benchmarks

Name

BWB

XML (compression %)

Allocated memory

CC(1)

55.619

7.974 (85.66%)

398.248

UAT(1)

68.276

20.486 (70.00%)

403.136

CC(2)

102.870

19.875 (80.68%)

503.344

UAT(2)

106.271

21.100 (80.15%)

480.448

MAPKc

577.962

50.618 (91.24%)

1.721.616

Bycc(1)

909.064

172.266 (81.05%)

2.038.944

Gpc-RS

8.293.036

190.131 (97.71%)

21.790.768

Bycc(2)

130.821.452

3.735.872 (97.14%)

241.635.920

Bycc(3)

136.219.582

3.913.680 (97.13%)

191.823.072

Bycc(4)

148.322.373

4.318.744 (97.09%)

192.881.840

  1. Data set names have been shortened in: CC (Circadian Clock) [59], UAT (Unpacked antagonistic toggle switch in budding yeast cell cycle) [62], MAPKc (MAPK cascade), Gpc-RS (G-protein-coupled receptor signaling) [63] and Bycc (Budding yeast cell cycle) [64]. Measurements are expressed in KByte. We list the names of the models in the first column. The second one identifies the traces files size generated by BWB. The third one holds the sizes of the corresponding compressed XML files (in percentage). The last one lists the quantity of memory allocated (in KBytes) for the compression and conversion routines from BWB to XML formats.