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Table 3 GO-based annotation results of CFinder and MCODE modules

From: Inferring modules from human protein interactome classes

  module ID n n.ex ex.mean cor.mean mf.mean bp.mean cc.mean
High Int-2 5 5 8.33 0.22 0.76 0.7 0.7
  Int-3 5 1 8.54 NA 0.85 0.88 0.84
  Int-4 9 7 9.56 0.43 0.7 0.81 0.92
  Int-7 17 13 8.88 0.17 0.63 0.58 0.66
  Lit-2 5 5 8.33 0.22 0.76 0.7 0.7
  Lit-5 9 9 9.62 0.42 0.59 0.68 0.66
  Lit-9 8 8 9.02 0.62 0.85 0.92 0.82
  Lit-11 10 9 8.17 0.3 0.58 0.74 0.61
  Ortho-8 15 11 8.9 0.15 0.68 0.57 0.67
  Ortho-12 10 9 10.73 0.59 0.83 1 0.98
Medium Int-18 18 16 9.55 0.54 0.45 0.51 0.7
  Ortho-18 17 15 9.65 0.58 0.49 0.6 0.72
Low Int-13 13 11 8.79 0.39 0.45 0.73 0.96
  Lit-4 16 11 7.95 0.24 0.28 0.52 0.58
  Lit-14 11 10 8.79 0.39 0.4 0.72 0.95
  Ortho-7 8 7 9.48 0.41 0.48 0.56 0.61
MCODE module ID n n.ex ex.mean cor.mean mf.mean bp.mean cc.mean
High Int-5 9 7 9.56 0.43 0.7 0.81 0.92
  Lit-4 7 7 8.99 0.13 0.89 0.79 0.71
  Ortho-4 12 9 9.37 0.31 0.51 0.59 0.54
  Ortho-5 9 7 12.92 0.77 0.65 0.78 0.71
Low Lit-11 9 8 8.34 0.24 0.4 0.59 0.69
  Lit-13 22 20 8.81 0.32 0.33 0.5 0.63
  Ortho-2 6 5 8.08 0.29 0.41 0.78 0.73
  Ortho-10 11 9 8.38 0.38 0.39 0.52 0.67
  1. GO-based annotation results of CFinder andMCODE modules: High (bold font for every GO category), Medium (cor.mean 0.5), and Low (cor.mean < 0.5) confidence groups.