Table 4 Pathways
From: Inferring modules from human protein interactome classes
| CFinder | module ID | Protein IDs | Pathways |
|---|---|---|---|
| High | Int-2 | - | na |
| Int-3 | - | na | |
| Int-4 | - | na | |
| Int-7 |
POLR3G POLR3A POLR3 H POLR1A ZNRD1 POLR1D POLR2C POLR2E POLR2 H POLR2L POLR1B POLR3GL POLR1C | hsa03020 RNA polymerase | |
| Lit-2 | - | na | |
| Lit-5 |
POLR2A POLR2C POLR2 D POLR2E POLR2G POLR2 H POLR2L | hsa03020 RNA polymerase | |
| Lit-9 |
LSM1 LSM2 LSM3 LSM4 LSM5 LSM6 LSM7 LSM1 LSM2 LSM3 LSM4 LSM5 LSM6 LSM7 |
hsa03018 RNA degradation hsa03040 Spliceosome | |
| Lit-11 |
SKIV2L2 EXOSC2 EXOSC4 EXOSC5 EXOSC6 EXOSC7 EXOSC8 EXOSC9 | hsa03018 RNA degradation | |
| Ortho-8 |
POLR3G POLR3A POLR3 H POLR1A ZNRD1 POLR1 D POLR2E POLR2F POLR2 H POLR2L POLR1B POLR3GL POLR1C | hsa03020 RNA polymerase | |
| Ortho-12 |
PSMA1 PSMA2 PSMA4 PSMA6 PSMA7 PSMB1 PSMB2 PSMB3 PSMB5 | hsa03050 Proteasome | |
| Medium | Int-18 |
PSMA1 PSMB2 PSMC2 PSMC3 PSMD11 PSMD12 PSMD13 PSMD6 | hsa03050 Proteasome |
| Ortho-18 |
PSMA1 PSMB2 PSMC2 PSMC3 PSMD11 PSMD12 PSMD13 PSMD6 | hsa03050 Proteasome | |
| Low | Int-13 |
TAF1 TAF2 TAF4 TAF5 TAF6 TAF7 TAF9 TAF10 TAF12 TAF13 TBP | hsa03022 Basal transcription factors |
| Lit-4 | MYC RUVBL1 | hsa04310 Wnt signaling pathway | |
| Lit-14 |
TAF1 TAF2 TAF4 TAF5 TAF6 TAF7 TAF9 TAF10 TAF12 | hsa03022 Basal transcription factors | |
| Ortho-7 | EXOSC2 EXOSC3 EXOSC4 EXOSC5 | hsa03018 RNA degradation | |
| MCODE | module ID | Protein IDs | Pathways |
| High | Int-5 | - | na |
| Lit-4 | - | na | |
| Ortho-4 | DDX6 LSM1 LSM2 | hsa03018 RNA degradation | |
| Ortho-5 | RPL3 RPL12 RPL27A RPS2 | hsa03010 Ribosome | |
| Low | Lit-11 | -. | na |
| Lit-13 |
TAF1 TAF2 TAF4 TAF5 TAF6 TAF7 TAF9 TAF10 TAF12 HDAC1 HDAC2 |
hsa03022 Basal transcription factors hsa04110 Cell cycle | |
| Ortho-2 | TAF9B TAF5 TAF6 TAF12 | hsa03022 Basal transcription factors | |
| Ortho-10 | PPP1CA PPP1CB |
hsa04720 Long-term potentiation hsa03018 RNA degradation hsa04810 Regulation of actin cytoskeleton hsa04910 Insulin signaling pathway hsa04510 Focal adhesion |