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Table 4 Pathways

From: Inferring modules from human protein interactome classes

CFinder module ID Protein IDs Pathways
High Int-2 - na
  Int-3 - na
  Int-4 - na
  Int-7 POLR3G POLR3A POLR3 H POLR1A
ZNRD1 POLR1D
POLR2C POLR2E POLR2 H POLR2L
POLR1B POLR3GL POLR1C
hsa03020 RNA polymerase
  Lit-2 - na
  Lit-5 POLR2A POLR2C POLR2 D POLR2E
POLR2G POLR2 H POLR2L
hsa03020 RNA polymerase
  Lit-9 LSM1 LSM2 LSM3 LSM4 LSM5 LSM6 LSM7
LSM1 LSM2 LSM3 LSM4 LSM5 LSM6 LSM7
hsa03018 RNA degradation
hsa03040 Spliceosome
  Lit-11 SKIV2L2 EXOSC2 EXOSC4 EXOSC5
EXOSC6 EXOSC7 EXOSC8 EXOSC9
hsa03018 RNA degradation
  Ortho-8 POLR3G POLR3A POLR3 H POLR1A
ZNRD1 POLR1 D POLR2E POLR2F
POLR2 H POLR2L POLR1B POLR3GL POLR1C
hsa03020 RNA polymerase
  Ortho-12 PSMA1 PSMA2 PSMA4
PSMA6 PSMA7 PSMB1
PSMB2 PSMB3 PSMB5
hsa03050 Proteasome
Medium Int-18 PSMA1 PSMB2 PSMC2 PSMC3
PSMD11 PSMD12 PSMD13 PSMD6
hsa03050 Proteasome
  Ortho-18 PSMA1 PSMB2 PSMC2 PSMC3
PSMD11 PSMD12 PSMD13 PSMD6
hsa03050 Proteasome
Low Int-13 TAF1 TAF2 TAF4 TAF5
TAF6 TAF7 TAF9 TAF10
TAF12 TAF13 TBP
hsa03022 Basal transcription factors
  Lit-4 MYC RUVBL1 hsa04310 Wnt signaling pathway
  Lit-14 TAF1 TAF2 TAF4
TAF5 TAF6 TAF7
TAF9 TAF10 TAF12
hsa03022 Basal transcription factors
  Ortho-7 EXOSC2 EXOSC3 EXOSC4 EXOSC5 hsa03018 RNA degradation
MCODE module ID Protein IDs Pathways
High Int-5 - na
  Lit-4 - na
  Ortho-4 DDX6 LSM1 LSM2 hsa03018 RNA degradation
  Ortho-5 RPL3 RPL12 RPL27A RPS2 hsa03010 Ribosome
Low Lit-11 -. na
  Lit-13 TAF1 TAF2 TAF4 TAF5
TAF6 TAF7 TAF9 TAF10
TAF12 HDAC1 HDAC2
hsa03022 Basal transcription factors
hsa04110 Cell cycle
  Ortho-2 TAF9B TAF5 TAF6 TAF12 hsa03022 Basal transcription factors
  Ortho-10 PPP1CA PPP1CB hsa04720 Long-term potentiation
hsa03018 RNA degradation
hsa04810 Regulation of actin cytoskeleton
hsa04910 Insulin signaling pathway
hsa04510 Focal adhesion
  1. Pathways results for CFinder and MCODE High, Medium and Low confidence modules (KEGG source [55], na: not annotated). See also: Figure 9-12.