Table 4 Pathways
From: Inferring modules from human protein interactome classes
CFinder | module ID | Protein IDs | Pathways |
|---|---|---|---|
High | Int-2 | - | na |
| Â | Int-3 | - | na |
| Â | Int-4 | - | na |
| Â | Int-7 | POLR3G POLR3A POLR3 H POLR1A ZNRD1 POLR1D POLR2C POLR2E POLR2 H POLR2L POLR1B POLR3GL POLR1C | hsa03020 RNA polymerase |
| Â | Lit-2 | - | na |
| Â | Lit-5 | POLR2A POLR2C POLR2 D POLR2E POLR2G POLR2 H POLR2L | hsa03020 RNA polymerase |
| Â | Lit-9 | LSM1 LSM2 LSM3 LSM4 LSM5 LSM6 LSM7 LSM1 LSM2 LSM3 LSM4 LSM5 LSM6 LSM7 | hsa03018 RNA degradation hsa03040 Spliceosome |
| Â | Lit-11 | SKIV2L2 EXOSC2 EXOSC4 EXOSC5 EXOSC6 EXOSC7 EXOSC8 EXOSC9 | hsa03018 RNA degradation |
| Â | Ortho-8 | POLR3G POLR3A POLR3 H POLR1A ZNRD1 POLR1 D POLR2E POLR2F POLR2 H POLR2L POLR1B POLR3GL POLR1C | hsa03020 RNA polymerase |
| Â | Ortho-12 | PSMA1 PSMA2 PSMA4 PSMA6 PSMA7 PSMB1 PSMB2 PSMB3 PSMB5 | hsa03050 Proteasome |
Medium | Int-18 | PSMA1 PSMB2 PSMC2 PSMC3 PSMD11 PSMD12 PSMD13 PSMD6 | hsa03050 Proteasome |
| Â | Ortho-18 | PSMA1 PSMB2 PSMC2 PSMC3 PSMD11 PSMD12 PSMD13 PSMD6 | hsa03050 Proteasome |
Low | Int-13 | TAF1 TAF2 TAF4 TAF5 TAF6 TAF7 TAF9 TAF10 TAF12 TAF13 TBP | hsa03022 Basal transcription factors |
| Â | Lit-4 | MYC RUVBL1 | hsa04310 Wnt signaling pathway |
| Â | Lit-14 | TAF1 TAF2 TAF4 TAF5 TAF6 TAF7 TAF9 TAF10 TAF12 | hsa03022 Basal transcription factors |
| Â | Ortho-7 | EXOSC2 EXOSC3 EXOSC4 EXOSC5 | hsa03018 RNA degradation |
MCODE | module ID | Protein IDs | Pathways |
High | Int-5 | - | na |
| Â | Lit-4 | - | na |
| Â | Ortho-4 | DDX6 LSM1 LSM2 | hsa03018 RNA degradation |
| Â | Ortho-5 | RPL3 RPL12 RPL27A RPS2 | hsa03010 Ribosome |
Low | Lit-11 | -. | na |
| Â | Lit-13 | TAF1 TAF2 TAF4 TAF5 TAF6 TAF7 TAF9 TAF10 TAF12 HDAC1 HDAC2 | hsa03022 Basal transcription factors hsa04110 Cell cycle |
| Â | Ortho-2 | TAF9B TAF5 TAF6 TAF12 | hsa03022 Basal transcription factors |
| Â | Ortho-10 | PPP1CA PPP1CB | hsa04720 Long-term potentiation hsa03018 RNA degradation hsa04810 Regulation of actin cytoskeleton hsa04910 Insulin signaling pathway hsa04510 Focal adhesion |