From: Inferring modules from human protein interactome classes
CFinder modules | Confidence level | MIPS complex name | p-value | Precision | Recall |
---|---|---|---|---|---|
Lit-2 | High | Chromatin assembly complex (CAF-1 complex) | 0.000001 | 0.4 | 0.4 |
Lit-5 | High | RNA polymerase II core complex | 0 | 0.89 | 0.67 |
Lit-9 | High | LSM 1-7 complex | 0 | 0.88 | 1 |
Lit-11 | High | Exosome | 1.61e-022 | 0.7 | 0.7 |
Lit-14 | Low | TFIID subcomplex | 1.38e-29 | 1 | 1 |
Lit-4 | Low | TIP60 HAT complex | 5.80e-15 | 0.25 | 0.8 |
Ortho-8 | High | RNA polymerase II core complex | 1.42e-025 | 0.24 | 0.34 |
Ortho-12 | High | 20S proteasome | 2.89e-027 | 0.73 | 0.57 |
Ortho-18 | Medium | PA700 complex | 1.60e-42 | 0.72 | 0.65 |
Ortho-7 | Low | Exosome | 1.31e-11 | 0.5 | 0.4 |
Int-2 | High | Chromatin assembly complex | o.000001 | 0.4 | 0.4 |
Int-3 | High | CEN complex | 0 | 0.2 | 0.03 |
Int-4 | High | - | - | - | - |
Int-7 | High | RNA polymerase II core complex | 6.95e-025 | 0.26 | 0.42 |
Int-18 | Medium | PA 700 complex | 1.06e-41 | 0.6 | 0.6 |
Int-13 | Low | TFIID subcomplex | 5.58e-36 | 0.38 | 1 |
Literature | Â | Â | Â | 0.83 | 0.86 |
Orthology | Â | Â | Â | 0.25 | 0.25 |
Integrated | Â | Â | Â | 0.4 | 0.69 |
MCODE modules | Confidence level | MIPS complex name | p-value | Precision | Recall |
Lit-4 | High | Rnase/Mrp complex | 6.91e-017 | 0.86 | 0.6 |
Lit-11 | Low | MED18-MED20-MED29 mediator subcomplex | 1.18e-13 | 0.11 | 0.34 |
Lit-13 | Low | TFIID subcomplex | 4.81e-25 | 0.24 | 1 |
Ortho-4 | High | - | - | - | - |
Ortho-5 | High | 60S ribosomal subunit, cytoplasmic | 1.78e-11 | 0.78 | 0.15 |
Ortho-2 | Low | TFIID subcomplex | 4.01e-10 | 0.43 | 0.6 |
Ortho-10 | Low | Cleavage and polyadenylation factor (CPSF) | 0.00206 | 0.46 | 1 |
Int-5 | High | - | - | - | - |
Int-3 | - | Nop56p-associated pre-rRNA complex | 4.88e-17 | 0.38 | 0.05 |
Int-10 | - | Arp2/3 complex | 1.18e-19 | 0.6 | 0.86 |
Int-14 | - | 39S ribosomal subunit, mitochondrial | 8.92e-17 | 0.23 | 0.88 |
Literature | Â | Â | Â | 0.67 | 0.25 |
Orthology | Â | Â | Â | 0.5 | 0.23 |
Integrated | Â | Â | Â | 0.34 | 0.13 |