Integrative multicellular biological modeling: a case study of 3D epidermal development using GPU algorithms

BMC Systems Biology

Table 3 Execution Time of Algorithms by Cell Population Sizes

Method	128 cells	250 cells	500 cells	1000 cells	5000 cells
Movement
Newman	180s
No boundary	16s	33s	80s	218s	Kernel limit
Periodic boundary	43s	85s	263s	793s	Kernel limit
Center, No boundary	10s	20s	33s	50s	550s
Center, Periodic boundary	26s	48s	79s	125s	944s
Movement, Gene Network
No boundary	18s	38s	86s	241s	Kernel limit
Periodic boundary	46s	87s	286s	811s	Kernel limit
Center, No boundary	13s	24s	42s	72s	630s
Center, Periodic boundary	29s	51s	88s	146s	1038s
Full Model
Center, No boundary	18m19s	41m59s	93m38s	239m34s
Final cell count	623	1159	2377	4735
Center, Periodic boundary	61m14s	151m25s	286m15s	573m55s
Final cell count	582	1059	2286	4585

ISSN: 1752-0509