Table 2 Comparison of DBSolve Optimum visualization functionality with that of Copasi, Teranode, Cell Designer, SBML Pet and SimWIZ
Features of visualization | DBSolve Optimum | Cell Designer | COPASI (*) | Teranode | SBML PET | SimWiz | SimWiz 3D |
|---|---|---|---|---|---|---|---|
Create scheme of the model | + | + | - | + | - | + | + |
Annotate scheme | + | + | - | + | - | - | - |
Add user shapes to scheme | + | + | - | + | - | - | - |
Add user text to scheme | + | + | - | - | - | - | - |
Plot simulation results | + | + | + | + | + | - | - |
Plot experimental data versus simulations result | + | - | + | - | + | - | - |
Animate changes of metabolite concentrations on the scheme | + | - | + | - | - | + | + |
Animate changes of reaction rates on the scheme | + | - | - | - | - | - | - |
Number of animation types | 3 | 0 | 1 | 0 | 0 | 1 | 2 |
Time or Parameter changing progress bar | + | - | - | - | - | - | - |
Save animation to AVI | + | - | - | - | - | - | - |