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Table 2 Comparison of DBSolve Optimum visualization functionality with that of Copasi, Teranode, Cell Designer, SBML Pet and SimWIZ

From: DBSolve Optimum: a software package for kinetic modeling which allows dynamic visualization of simulation results

Features of visualization DBSolve Optimum Cell Designer COPASI (*) Teranode SBML PET SimWiz SimWiz 3D
Create scheme of the model + + - + - + +
Annotate scheme + + - + - - -
Add user shapes to scheme + + - + - - -
Add user text to scheme + + - - - - -
Plot simulation results + + + + + - -
Plot experimental data versus simulations result + - + - + - -
Animate changes of metabolite concentrations on the scheme + - + - - + +
Animate changes of reaction rates on the scheme + - - - - - -
Number of animation types 3 0 1 0 0 1 2
Time or Parameter changing progress bar + - - - - - -
Save animation to AVI + - - - - - -
  1. A list of tools implemented (marked by "+") or not implemented (marked by "-") in corresponding software package is presented.