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Table 2 Selection order for regional metagenes in prediction of proliferation

From: Genomic distance entrained clustering and regression modelling highlights interacting genomic regions contributing to proliferation in breast cancer

RMG

Chr

Cytobands

Position (Mb)

Genes

Correlation

1

8

8q13.1 - 8q22.3

66.72 - 104.15

21

0.52

2

8

8p22 - 8p12

17.55 - 31.15

19

-0.41

3

11

11q13.1 - 11q13.4

66.01 - 70.89

11

0.38

4

7

7p15.2 - 7p15.2

27.15 - 27.18

4

-0.39

5

3

3p21.31 - 3p14.3

49.13 - 58.5

9

-0.26

6

16

16p13.3 - 16p13.2

0.04 - 8.86

12

0.45

7

17

17p13.3 - 17p11.2

0.59 - 19.71

19

-0.11

8

22

22q11.22 - 22q11.22

20.88 - 21.57

5

-0.04

9

1

1q24.2 - 1q44

166.15 - 245

23

0.13

10

23

23q28 - 23q28

148.67 - 153.54

8

0.32

11

19

19q13.11 - 19q13.43

40.22 - 63.77

34

-0.13

12

3

3q13.32 - 3q22.1

120.41 - 132.22

8

0.30

13

1

1p13.3 - 1p13.3

110 - 110.09

4

-0.29

14

16

16p13.3 - 16p13.2

0.71 - 8.78

8

-0.07

15

16

16q13 - 16q22.3

55.32 - 73.24

16

0.40

16

22

22q12.2 - 22q13.33

28.46 - 49.31

20

0.22

17

23

23q22.1 - 23q22.2

99.77 - 102.52

6

-0.31

18

6

6q14.2 - 6q23.3

83.93 - 137.41

9

0.14

19

7

7q21.12 - 7q22.3

86.81 - 107.05

9

-0.16

20

20

20p11.21 - 20q13.33

25.18 - 62.13

18

0.09

21

7

7q34 - 7q34

142.14 - 142.18

4

0.11

22

17

17p11.2 - 17q21.32

19.38 - 43.11

15

0.10

23

11

11q14.1 - 11q25

85.05 - 133.6

13

-0.20

24

11

11q12.2 - 11q13.4

60.86 - 72.62

11

0.20

25

5

5q13.1 - 5q13.2

69.21 - 70.46

8

-0.11

26

8

8q24.3 - 8q24.3

141.6 - 146.25

19

0.47

27

11

11q22.3 - 11q24.3

109.61 - 129.59

11

-0.02

28

17

17q23.3 - 17q25.3

58.86 - 78.25

24

0.27

29

18

18q11.2 - 18q21.33

17.48 - 59.14

14

-0.11

30

17

17q21.31 - 17q24.1

38.06 - 59.92

17

0.16

31

22

22q12.3 - 22q13.1

34.37 - 37.81

10

0.08

32

12

12p13.31 - 12p13.2

6.42 - 10.48

10

0.06

33

17

17q11.2 - 17q21.31

23.39 - 39.99

19

0.08

34

17

17q22 - 17q24.2

53.3 - 64.04

9

0.16

35

17

17q12 - 17q21.1

33.04 - 35.61

8

0.27

36

19

19q13.42 - 19q13.42

59.41 - 59.84

4

0.21

37

6

6q25.1 - 6q25.1

151.77 - 152.46

4

-0.01

38

8

8p12 - 8p11.21

37.74 - 42.87

8

0.14

39

19

19p13.3 - 19p13.13

0.94 - 12.93

10

0.27

40

19

19q13.2 - 19q13.2

46.07 - 46.29

4

-0.06

41

14

14q32.33 - 14q32.33

105.4 - 106.35

4

-0.07

42

6

6p22.1 - 6p21.32

26.47 - 32.94

12

0.11

  1. The RMGs are numbered in selection order. The chromosome, cytobands, position, number of genes and the correlation to the proliferation metagene for the merged 793- sample dataset are shown.