Table 10 Optimal parameters for CMC, MCL, PCP and RNSC algorithms.
From: Protein complex prediction based on k-connected subgraphs in protein interaction network
Algorithm | Parameter | Optimal value |
|---|---|---|
MCL | Inflation | 1.8 |
CMC | Min-deg-ratio | 1 |
| Â | Overlap-threshold | 0.5 |
| Â | Merge-threshold | 0.25 |
| Â | Min-size | 4 |
PCP | FSWeight-threshold | 0.4 |
| Â | Min clique size | 4 |
| Â | Overlap-threshold | 0.5 |
RNSC | Diversification frequency | 50 |
| Â | Tabu length | 50 |
| Â | Number of experiments | 3 |
| Â | Scaled stopping tolerance | 15 |
| Â | Shuffling diversification length | 9 |