BMC Systems Biology

Table 7 Precision and recall values after removing highly overlapping clusters.

From: Protein complex prediction based on k-connected subgraphs in protein interaction network

			APC			MPC
Method	Data Set	No. of Cluster	Recall/Prec/F-measure			Recall/Prec/F-measure
CFA	(1)	238	0.822	0.277	0.415	0.170	0.378	0.235
CMC	(1)	208	0.741	0.235	0.358	0.145	0.322	0.200
MCL	(1)	467	0.790	0.113	0.199	0.147	0.164	0.155
PCP	(1)	230	0.758	0.226	0.348	0.133	0.282	0.181
RNSC	(1)	186	0.809	0.274	0.409	0.150	0.365	0.213
CFA	(2)	164	0.924	0.390	0.549	0.250	0.530	0.340
CMC	(2)	197	0.924	0.274	0.423	0.214	0.355	0.267
MCL	(2)	191	0.905	0.272	0.419	0.221	0.356	0.272
PCP	(2)	144	0.811	0.319	0.458	0.214	0.416	0.283
RNSC	(2)	152	0.924	0.348	0.506	0.205	0.263	0.230
CFA	(3)	124	0.907	0.475	0.624	0.250	0.564	0.347
CMC	(3)	122	0.500	0.237	0.322	0.123	0.295	0.173
MCL	(3)	215	0.851	0.237	0.371	0.248	0.395	0.305
PCP	(3)	82	0.481	0.487	0.485	0.116	0.365	0.176
RNSC	(3)	90	0.425	0.255	0.320	0.120	0.377	0.183
CFA	(4)	169	0.767	0.337	0.469	0.180	0.455	0.258
CMC	(4)	120	0.714	0.341	0.462	0.158	0.450	0.234
MCL	(4)	150	0.767	0.293	0.425	0.169	0.386	0.235
PCP	(4)	130	0.678	0.300	0.416	0.133	0.369	0.196
RNSC	(4)	108	0.660	0.370	0.475	0.160	0.500	0.242
CFA	(5)	96	0.400	0.156	0.225	0.105	0.385	0.165
CMC	(5)	109	0.166	0.045	0.072	0.073	0.247	0.113
MCL	(5)	71	0.400	0.169	0.238	0.105	0.408	0.167
PCP	(5)	43	0.133	0.093	0.110	0.055	0.325	0.094
RNSC	(5)	16	0.166	0.312	0.217	0.023	0.562	0.045
CFA	(6)	41	0.134	0.049	0.071	0.126	0.195	0.153
CMC	(6)	8	0.000	0.000	0.000	0.008	0.125	0.015
MCL	(6)	52	0.134	0.076	0.097	0.117	0.192	0.145
PCP	(6)	8	0.000	0.000	0.000	0.008	0.125	0.015
RNSC	(6)	5	0.000	0.000	0.000	0.008	0.400	0.016

The "data sets" column refers to networks, where (1) denotes PPI_Biogrid, (2) denotes PPI_{Gavin 6}, (3) denotes PPI_{Gavin 2}, (4) denotes PPI_Krogan, (5) denotes PPI_Ho, and (6) denotes PPI_Ito. The best precision and recall value for each PPI network are highlighted in bold font.

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