Skip to main content

Table 6 Reporter metabolites for the light shift experiment.

From: Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium

a)

b)

c)

Metabolite

Number of neighbors

Metabolite

Number of neighbors

Metabolite

Number of neighbors

All time points

Dark to Light

Light to Dark

L-tyrosine

4

N-carbamoyl-L-aspartate

3

5-phosphoribosyl-N-formylglycineamidine

3

N-carbamoyl-L-aspartate

3

dihydroorotate

3

diphosphate

76

dTDP

4

5-phosphoribosyl 1-pirophosphate

9

a 1,4-alpha-D-glucan_n

2

L-isoleucine

3

L-valine

3

a 1,4-alpha-D-glucan_n1

2

D-ribulose-5-phosphate

4

5-phospho-ribosyl-glycineamide

3

UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate

2

D-myo-inositol (3)-monophosphate

2

O-phospho-L-homoserine

2

pyridoxine-5'-phosphate

2

myo-inositol

2

peptidylproline (omega = 180)

4

(E, E)-farnesyl diphosphate

3

L-valine

3

peptidylproline (omega = 0)

4

GMP

6

succinyl-CoA

3

indole-3-glycerol-phosphate

2

phosphoribosylformiminoAICAR-phosphate

2

adenosine

2

5-aminoimidazole ribonucleotide

3

L-aspartyl-4-phosphate

2

GTP

13

tetrahydrofolate cofactors

8

pantothenate

2

thioredoxin

11

GTP

13

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

2

thioredoxin disulfide

11

L-glutamate gamma-semialdehyde

2

MurAc(oyl-L-Ala-D-gamma-Glu-L-Lys-D-Ala-D-Ala)-diphospho-undecaprenol

2

p-aminobenzoate

2

inosine-5'-phosphate

5

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine

2

acetylphosphate

2

pantetheine 4'-phosphate

2

L-aspartate-semialdehyde

2

glycine

7

UDP-N-acetylmuramoyl-L-alanyl-D-glutamate

2

5-phospho-ribosyl-glycineamide

3

succinate

7

phytoene

2

5'-phosphoribosyl-N-formylglycineamide

4

dihydroorotate

3

thioredoxin

11

sulfur

2

PC

12

thioredoxin disulfide

11

glycine

7

  1. Reporter metabolites for each set of arrays analysed with Reporter Features software.