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Table 6 Reporter metabolites for the light shift experiment.

From: Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium

a) b) c)
Metabolite Number of neighbors Metabolite Number of neighbors Metabolite Number of neighbors
All time points Dark to Light Light to Dark
L-tyrosine 4 N-carbamoyl-L-aspartate 3 5-phosphoribosyl-N-formylglycineamidine 3
N-carbamoyl-L-aspartate 3 dihydroorotate 3 diphosphate 76
dTDP 4 5-phosphoribosyl 1-pirophosphate 9 a 1,4-alpha-D-glucan_n 2
L-isoleucine 3 L-valine 3 a 1,4-alpha-D-glucan_n1 2
D-ribulose-5-phosphate 4 5-phospho-ribosyl-glycineamide 3 UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate 2
D-myo-inositol (3)-monophosphate 2 O-phospho-L-homoserine 2 pyridoxine-5'-phosphate 2
myo-inositol 2 peptidylproline (omega = 180) 4 (E, E)-farnesyl diphosphate 3
L-valine 3 peptidylproline (omega = 0) 4 GMP 6
succinyl-CoA 3 indole-3-glycerol-phosphate 2 phosphoribosylformiminoAICAR-phosphate 2
adenosine 2 5-aminoimidazole ribonucleotide 3 L-aspartyl-4-phosphate 2
GTP 13 tetrahydrofolate cofactors 8 pantothenate 2
thioredoxin 11 GTP 13 undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine 2
thioredoxin disulfide 11 L-glutamate gamma-semialdehyde 2 MurAc(oyl-L-Ala-D-gamma-Glu-L-Lys-D-Ala-D-Ala)-diphospho-undecaprenol 2
p-aminobenzoate 2 inosine-5'-phosphate 5 undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine 2
acetylphosphate 2 pantetheine 4'-phosphate 2 L-aspartate-semialdehyde 2
glycine 7 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate 2 5-phospho-ribosyl-glycineamide 3
succinate 7 phytoene 2 5'-phosphoribosyl-N-formylglycineamide 4
dihydroorotate 3 thioredoxin 11 sulfur 2
PC 12 thioredoxin disulfide 11 glycine 7
  1. Reporter metabolites for each set of arrays analysed with Reporter Features software.