From: Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium
a) | b) | c) | |||
---|---|---|---|---|---|
Metabolite | Number of neighbors | Metabolite | Number of neighbors | Metabolite | Number of neighbors |
All time points | Dark to Light | Light to Dark | |||
L-tyrosine | 4 | N-carbamoyl-L-aspartate | 3 | 5-phosphoribosyl-N-formylglycineamidine | 3 |
N-carbamoyl-L-aspartate | 3 | dihydroorotate | 3 | diphosphate | 76 |
dTDP | 4 | 5-phosphoribosyl 1-pirophosphate | 9 | a 1,4-alpha-D-glucan_n | 2 |
L-isoleucine | 3 | L-valine | 3 | a 1,4-alpha-D-glucan_n1 | 2 |
D-ribulose-5-phosphate | 4 | 5-phospho-ribosyl-glycineamide | 3 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate | 2 |
D-myo-inositol (3)-monophosphate | 2 | O-phospho-L-homoserine | 2 | pyridoxine-5'-phosphate | 2 |
myo-inositol | 2 | peptidylproline (omega = 180) | 4 | (E, E)-farnesyl diphosphate | 3 |
L-valine | 3 | peptidylproline (omega = 0) | 4 | GMP | 6 |
succinyl-CoA | 3 | indole-3-glycerol-phosphate | 2 | phosphoribosylformiminoAICAR-phosphate | 2 |
adenosine | 2 | 5-aminoimidazole ribonucleotide | 3 | L-aspartyl-4-phosphate | 2 |
GTP | 13 | tetrahydrofolate cofactors | 8 | pantothenate | 2 |
thioredoxin | 11 | GTP | 13 | undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine | 2 |
thioredoxin disulfide | 11 | L-glutamate gamma-semialdehyde | 2 | MurAc(oyl-L-Ala-D-gamma-Glu-L-Lys-D-Ala-D-Ala)-diphospho-undecaprenol | 2 |
p-aminobenzoate | 2 | inosine-5'-phosphate | 5 | undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine | 2 |
acetylphosphate | 2 | pantetheine 4'-phosphate | 2 | L-aspartate-semialdehyde | 2 |
glycine | 7 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate | 2 | 5-phospho-ribosyl-glycineamide | 3 |
succinate | 7 | phytoene | 2 | 5'-phosphoribosyl-N-formylglycineamide | 4 |
dihydroorotate | 3 | thioredoxin | 11 | sulfur | 2 |
PC | 12 | thioredoxin disulfide | 11 | glycine | 7 |