Table 2 Base classifiers comparison based on different feature-sets
Feature | Average CCR (Corr. Coef.) % | ||
|---|---|---|---|
| Â | KNN | Bayes with Gaussian PDF | Bayes with MDM PDF |
Amino Acid compositions | 26.0 (11.5) | 25.0 (50.0) | 33.6 (15.0) |
Dipeptides | 31.7 (21.8) | 31.5 (25.1) | 43.9 (36.8) |
PairsComp1Gap | 31.5 (23.7) | 31.6 (27.2) | 43.0 (29.4) |
PairsComp2Gaps | 30.7 (21.0) | 31.8 (25.7) | 45.9 (34.4) |
Haralick Features | 26.9 (03.5) | 26.6 (06.1) | 26.0 (07.8) |
48 physicochemical prop. | 26.6 (10.3) | 25.0 (50.0) | 29.4 (13.5) |
Biological Process level 1 | 31.8 (16.8) | 27.8 (16.4) | 34.3 (18.8) |
Biological Process level 2 | 33.0 (22.2) | 33.5 (18.0) | 30.9 (14.1) |
Cellular level 1 | 32.7 (25.8) | 27.0 (19.0) | 35.4 (29.5) |
Cellular level 2 | 31.4 (28.5) | 31.0 (20.2) | 28.2 (14.5) |
Functional Process level 1 | 30.0 (10.9) | 27.3 (08.4) | 27.6 (11.6) |
Functional Process level 2 | 28.2 (15.8) | 30.5 (17.9) | 28.3 (15.7) |
Domains | 56.0 (60.0) | 67.1 (58.9) | 63.7 (55.5) |
Repeated Domains | 57.0 (59.3) | 66.6 (57.7) | 65.7 (57.1) |
Disordered Regions | 26.5 (07.5) | 25.2 (-4.0) | 27.2 (13.3) |
PSSM-20 | 26.2 (08.4) | 26.0 (08.4) | 26.0 (09.3) |
PSSM-400 | 37.0 (35.8) | 42.6 (42.1) | 54.1 (47.9) |