Table 2 Comparison of reactions in the P. carbinolicus, P. propionicus, G. sulfurreducens, and G. metallireducens metabolic models.
From: Constraint-based modeling analysis of the metabolism of two Pelobacter species
| Â | P. carbinolicus | P. propionicus | G. sulfurreducens | G. metallireducens | Common | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | All | Unique | % | All | Unique | % | All | Unique | % | All | Unique | % | Â |
Amino Acid Metabolism | 149 | 13 | 8.7% | 141 | 4 | 2.8% | 149 | 3 | 2.0% | 143 | 4 | 2.8% | 118 |
Carbohydrate Metabolism | 30 | 5 | 16.7% | 28 | 0 | 0.0% | 21 | 0 | 0.0% | 24 | 5 | 20.8% | 13 |
Central Metabolism | 65 | 6 | 9.2% | 60 | 6 | 10.0% | 56 | 1 | 1.8% | 62 | 5 | 8.1% | 39 |
Cofactor Metabolism | 103 | 3 | 2.9% | 99 | 2 | 2.0% | 106 | 1 | 0.9% | 104 | 0 | 0.0% | 93 |
Energy Metabolism | 16 | 6 | 37.5% | 11 | 1 | 9.1% | 22 | 4 | 18.2% | 20 | 1 | 5.0% | 8 |
Lipid Metabolism | 138 | 8 | 5.8% | 153 | 2 | 1.3% | 130 | 4 | 3.1% | 159 | 18 | 11.3% | 98 |
Nucleotide Metabolism | 96 | 24 | 25.0% | 77 | 0 | 0.0% | 77 | 0 | 0.0% | 76 | 2 | 2.6% | 65 |
Transport | 76 | 19 | 25.0% | 57 | 1 | 1.8% | 62 | 10 | 16.1% | 62 | 22 | 35.5% | 21 |
Other | 35 | 8 | 22.9% | 24 | 1 | 4.2% | 27 | 2 | 7.4% | 47 | 22 | 46.8% | 15 |
Total reactions | 708 | 92 | 13.0% | 650 | 17 | 2.6% | 650 | 25 | 3.8% | 697 | 79 | 11.3% | 470 |