Table 2 Model comparison results from simple network motifs.
From: Statistical model comparison applied to common network motifs
data source | measure | SIM | RC | FF | FB |
|---|---|---|---|---|---|
SIM | log p(Y | M i ) | 89.3 | 73.74 | 89.6 | 49.03 |
DIC | -198.1 | -192.5 | -198.8 | -177.51 | |
pD | 3.93 | 2.94 | 4.01 | 4.34 | |
log p(Y | | 102.99 | 102.44 | 103.45 | 100.70 | |
AIC | -197.98 | -196.88 | -196.9 | -191.4 | |
RC | log p(Y | M i ) | 29.21 | 87.61 | 73.58 | 55.38 |
DIC | -86.17 | -194.60 | -187.13 | -175.21 | |
pD | 4.08 | 3.92 | 4.53 | 4.66 | |
log p(Y | | 47.18 | 101.22 | 100.46 | 97.62 | |
AIC | -86.36 | -194.44 | -190.92 | -185.24 | |
FF | log p(Y | M i ) | 80.20 | 57.60 | 93.43 | 22.95 |
DIC | -184.7 | -153.1 | -208.8 | -131.53 | |
pD | 4.06 | 3.92 | 4.81 | 5.01 | |
log p(Y | | 96.42 | 81.03 | 109.17 | 77.64 | |
AIC | -184.84 | -154.06 | -208.34 | -145.28 | |
FB | log p(Y | M i ) | -17.60 | -13.93 | -39.68 | 79.07 |
DIC | 2351.3 | 2718.1 | 2375.8 | -181.37 | |
pD | 4.04 | 3.66 | 4.61 | 4.98 | |
log p(Y | | -1171.59 | -1355.33 | -1176.64 | 95.62 | |
AIC | 2351.2 | 2718.66 | 2363.26 | -181.24 |
, M
i
)
, M
i
)- Model comparison results for artificial data from the simple ODE models SIM, RC, FF (type 1 coherent with OR gate) and negative FB motifs. Each fit is assessed in terms of model evidence, log p(Y | Mi), the deviance information criteria, or DIC, the effective degrees of freedom, or pD, the maximum likelihood value obtained from MCMC simulations, log p(Y |
, M
i
), and Akaike's Information Criteria, or AIC.