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Table 2 GO Terms assignment for intra-nuclear bodies.

From: The proteins of intra-nuclear bodies: a data-driven analysis of sequence, interaction and expression

Intra-nuclear body GO Term Description E-Value
Nucleolus GO:0042254 Ribosome biogenesis and assembly 1.80E-19
  GO:0022613 Ribonucleoprotein complex biogenesis and assembly 3.30E-15
  GO:0016072 rRNA metabolic process 3.30E-14
  GO:0006364 rRNA processing 3.30E-14
  GO:0009059 Macromolecule biosynthetic process 2.90E-08
  GO:0043228 Non-membrane-bound organelle 3.30E-08
  GO:0043232 Intracellular non-membrane-bound organelle 3.30E-08
  GO:0006412 Translation 5.70E-08
  GO:0009058 Biosynthetic process 1.20E-06
PML nuclear body GO:0006950 Response to stress 6.10E-09
  GO:0006974 Response to DNA damage stimulus 1.70E-08
  GO:0009719 Response to endogenous stimulus 2.30E-08
  GO:0050896 Response to stimulus 4.00E-07
  GO:0006281 DNA repair 4.40E-05
  GO:0042770 DNA damage response, signal transduction 5.90E-05
  GO:0007049 Cell cycle 1.40E-03
  GO:0006464 Protein modification process 1.60E-03
  GO:0022402 Cell cycle process 2.70E-03
Nuclear Speckle GO:0016071 mRNA metabolic process 1.20E-61
  GO:0006397 mRNA processing 4.80E-61
  GO:0008380 RNA splicing 1.20E-58
  GO:0005681 Spliceosome 1.90E-38
  GO:0006396 RNA processing 5.80E-34
  GO:0030529 Ribonucleoprotein complex 1.90E-26
  GO:0003723 RNA binding 2.00E-25
  GO:0016070 RNA metabolic process 1.70E-06
  GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 4.10E-06
  GO:0000398 Nuclear mRNA splicing, via spliceosome 4.10E-06
  1. For each compartment, GO terms assigned to member proteins that are also deemed significantly enriched (relative the terms assigned to the pool of nuclear proteins) are shown using the term ID and the description. The E-value is the Bonferroni corrected p-value of the term as determined by the Fisher's exact test (see Methods). The E-value is below 0.01 for all terms shown. GO terms for the nuclear compartments and their parts are excluded.