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Table 2 The enriched miRNA target gene sets of the responsive gene modules of TNF stimulated HUVECs identified by different methods.

From: Identification of responsive gene modules by network-based gene clustering and extending: application to inflammation and angiogenesis

miRNA

ClustEx

tscore (z-score)

jActiveModules

tscore (z-score)

GXNA

tscore (z-score)

FoldChange_2.0

tscore (z-score)

miR-216/216b

33.49(3.48), 3 a

24.09(2.85), 4

15.95(5.23), 1

31.43(3.62), 2

miR-18ab

30.18(3.16), 1

24.28(3.06), 2

3.40(0.54), 4

17.73(1.33), 3

miR-145

60.49(2.60), 3

53.82(3.01), 1

19.16(2.61), 2

53.52(2.22), 4

miR-875-5p

14.64(2.58), 1

10.46(2.03), 3

0.00(-0.51), 4

11.53(2.12), 2

miR-7/7ab

35.26(2.31), 1

21.11(1.08), 2

4.85(0.50), 4

24.64(1.07), 3

miR-410

46.88(2.29), 1

34.59(1.73), 3

6.67(0.42), 4

43.50(2.10), 2

miR-221/222

34.97(2.18), 2

29.68(2.21), 1

3.88(0.14), 4

31.48(1.99), 3

miR-203

53.31(2.18), 2

38.25(1.47), 3

19.65(3.03), 1

40.47(1.02), 4

miR-143

28.69(1.85), 3

21.19(1.40), 4

19.89(5.86), 1

39.81(3.84), 2

miR-383

6.83(0.34), 3

3.03(-0.34), 4

2.34(0.71), 2

14.23(2.24), 1

  1. a The rank of the miRNA target gene set enrichment of the compared methods according to the corresponding tscores' z-scores. The bold font denotes the enriched miRNA target gene sets (z-score > 2.0).