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Table 2 The enriched miRNA target gene sets of the responsive gene modules of TNF stimulated HUVECs identified by different methods.

From: Identification of responsive gene modules by network-based gene clustering and extending: application to inflammation and angiogenesis

miRNA ClustEx tscore (z-score) jActiveModules tscore (z-score) GXNA tscore (z-score) FoldChange_2.0 tscore (z-score)
miR-216/216b 33.49(3.48), 3 a 24.09(2.85), 4 15.95(5.23), 1 31.43(3.62), 2
miR-18ab 30.18(3.16), 1 24.28(3.06), 2 3.40(0.54), 4 17.73(1.33), 3
miR-145 60.49(2.60), 3 53.82(3.01), 1 19.16(2.61), 2 53.52(2.22), 4
miR-875-5p 14.64(2.58), 1 10.46(2.03), 3 0.00(-0.51), 4 11.53(2.12), 2
miR-7/7ab 35.26(2.31), 1 21.11(1.08), 2 4.85(0.50), 4 24.64(1.07), 3
miR-410 46.88(2.29), 1 34.59(1.73), 3 6.67(0.42), 4 43.50(2.10), 2
miR-221/222 34.97(2.18), 2 29.68(2.21), 1 3.88(0.14), 4 31.48(1.99), 3
miR-203 53.31(2.18), 2 38.25(1.47), 3 19.65(3.03), 1 40.47(1.02), 4
miR-143 28.69(1.85), 3 21.19(1.40), 4 19.89(5.86), 1 39.81(3.84), 2
miR-383 6.83(0.34), 3 3.03(-0.34), 4 2.34(0.71), 2 14.23(2.24), 1
  1. a The rank of the miRNA target gene set enrichment of the compared methods according to the corresponding tscores' z-scores. The bold font denotes the enriched miRNA target gene sets (z-score > 2.0).