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Table 4 The enriched miRNA target gene sets of the responsive gene modules of VEGF stimulated HUVECs identified by different methods.

From: Identification of responsive gene modules by network-based gene clustering and extending: application to inflammation and angiogenesis

miRNA ClustEx tscore (z-score) jActiveModules tscore (z-score) GXNA tscore (z-score) FoldChange_2.0 tscore (z-score)
miR-132/212 67.20(4.87), 1 a 13.39(2.56), 3 2.24(-0.23), 4 28.71(2.78), 2
miR-194 58.17(3.89), 1 3.51(-0.49), 4 2.41(-0.12), 3 23.27(1.79), 2
miR-216/216b 38.29(3.29), 1 11.46(2.82), 3 7.40(2.95), 2 13.48(1.35), 4
miR-328 22.21(3.16), 1 0.69(-0.43), 4 0.34(-0.37), 3 10.79(2.09), 2
miR-342/342-3p 32.50(3.02), 3 12.48(3.47), 2 2.35(0.42), 4 23.72(4.06), 1
miR-490/490-3p 22.05(2.73), 2 0.24(-0.71), 4 0.00(-0.61), 3 17.34(3.76), 1
miR-200bc/429 103.98(2.64), 1 24.58(1.50), 3 14.12(1.57), 2 47.05(1.20), 4
miR-125a-3p 25.22(2.31), 1 1.71(-0.31), 2 0.11(-0.69), 3 2.27(-0.83), 4
miR-874 24.42(1.99), 2 3.03(0.11), 3 0.42(-0.60), 4 17.07(2.46), 1
miR-204/211 55.42(1.96), 2 7.44(-0.18), 4 5.03(0.23), 3 35.96(2.34), 1
miR-186 58.74(1.95), 2 19.21(2.22), 1 4.49(-0.02), 4 28.68(1.08), 3
miR-377 37.24(1.26), 2 19.87(3.55), 1 1.52(-0.69), 4 17.59(0.47), 3
miR-410 46.73(1.19), 2 22.02(2.93), 1 4.37(-0.01), 4 26.31(0.97), 3
miR-22 30.06(0.67), 2 18.02(3.14), 1 2.88(-0.08), 4 15.22(0.24), 3
miR-155 21.64(0.21), 3 12.02(2.11), 1 1.16(-0.64), 4 14.76(0.56), 2
miR-374/374ab 33.48(-0.02), 3 7.79(-0.20), 4 11.42(2.31), 1 27.80(1.04), 2
miR-495/1192 40.09(-0.05), 4 13.12(0.56), 3 14.26(2.70), 1 29.97(0.68), 2
miR-590/590-3p 39.34(-0.66), 3 11.95(-0.10), 2 19.89(3.63), 1 20.92(-0.95), 4
miR-183 9.12(-1.17), 4 2.57(-0.75), 3 9.89(2.92), 1 8.83(-0.57), 2
miR-24 9.71(-1.63), 4 1.79(-1.29), 2 9.39(2.01), 1 7.61(-1.38), 3
  1. a The rank of the miRNA target gene set enrichment of the compared methods according to the corresponding tscores' z-scores. The bold font denotes the enriched miRNA target gene sets (z-score > 2.0).