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Table 4 The enriched miRNA target gene sets of the responsive gene modules of VEGF stimulated HUVECs identified by different methods.

From: Identification of responsive gene modules by network-based gene clustering and extending: application to inflammation and angiogenesis

miRNA

ClustEx

tscore (z-score)

jActiveModules

tscore (z-score)

GXNA

tscore (z-score)

FoldChange_2.0

tscore (z-score)

miR-132/212

67.20(4.87), 1 a

13.39(2.56), 3

2.24(-0.23), 4

28.71(2.78), 2

miR-194

58.17(3.89), 1

3.51(-0.49), 4

2.41(-0.12), 3

23.27(1.79), 2

miR-216/216b

38.29(3.29), 1

11.46(2.82), 3

7.40(2.95), 2

13.48(1.35), 4

miR-328

22.21(3.16), 1

0.69(-0.43), 4

0.34(-0.37), 3

10.79(2.09), 2

miR-342/342-3p

32.50(3.02), 3

12.48(3.47), 2

2.35(0.42), 4

23.72(4.06), 1

miR-490/490-3p

22.05(2.73), 2

0.24(-0.71), 4

0.00(-0.61), 3

17.34(3.76), 1

miR-200bc/429

103.98(2.64), 1

24.58(1.50), 3

14.12(1.57), 2

47.05(1.20), 4

miR-125a-3p

25.22(2.31), 1

1.71(-0.31), 2

0.11(-0.69), 3

2.27(-0.83), 4

miR-874

24.42(1.99), 2

3.03(0.11), 3

0.42(-0.60), 4

17.07(2.46), 1

miR-204/211

55.42(1.96), 2

7.44(-0.18), 4

5.03(0.23), 3

35.96(2.34), 1

miR-186

58.74(1.95), 2

19.21(2.22), 1

4.49(-0.02), 4

28.68(1.08), 3

miR-377

37.24(1.26), 2

19.87(3.55), 1

1.52(-0.69), 4

17.59(0.47), 3

miR-410

46.73(1.19), 2

22.02(2.93), 1

4.37(-0.01), 4

26.31(0.97), 3

miR-22

30.06(0.67), 2

18.02(3.14), 1

2.88(-0.08), 4

15.22(0.24), 3

miR-155

21.64(0.21), 3

12.02(2.11), 1

1.16(-0.64), 4

14.76(0.56), 2

miR-374/374ab

33.48(-0.02), 3

7.79(-0.20), 4

11.42(2.31), 1

27.80(1.04), 2

miR-495/1192

40.09(-0.05), 4

13.12(0.56), 3

14.26(2.70), 1

29.97(0.68), 2

miR-590/590-3p

39.34(-0.66), 3

11.95(-0.10), 2

19.89(3.63), 1

20.92(-0.95), 4

miR-183

9.12(-1.17), 4

2.57(-0.75), 3

9.89(2.92), 1

8.83(-0.57), 2

miR-24

9.71(-1.63), 4

1.79(-1.29), 2

9.39(2.01), 1

7.61(-1.38), 3

  1. a The rank of the miRNA target gene set enrichment of the compared methods according to the corresponding tscores' z-scores. The bold font denotes the enriched miRNA target gene sets (z-score > 2.0).